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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 09:00:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 3521 from patent US 9551006.
KH516091.1:169-188
GAGAGAGAGAGAGAGATGAACAACGCCGGC169GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
Sequence 3539 from patent US 9551006.
KH516109.1:326-345
GAGAGAGAGAGAGAGATGAACAACGCCGGC326GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
Sequence 3521 from patent US 10457952.
MO459267.1:169-188
GAGAGAGAGAGAGAGATGAACAACGCCGGC169GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
Sequence 3539 from patent US 10457952.
MO459285.1:326-345
GAGAGAGAGAGAGAGATGAACAACGCCGGC326GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
Brassica oleracea var. viridis mRNA, clone: KALE-085K03, 5' end sequence.
DK488293.1:99-118
GAGAGAGAGAGAGAGATGAACAACGCCGGC99GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
Brassica oleracea var. viridis mRNA, clone: KALE-111M07, 5' end sequence.
DK498296.1:95-114
GAGAGAGAGAGAGAGATGAACAACGCCGGC95GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
48RDOAM_UP_036_F01_14SEP2004_005 O. Alba 48RDOAM Brassica oleracea cDNA 5', mRNA sequence.
DY018939.1:326-345
GAGAGAGAGAGAGAGATGAACAACGCCGGC326GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
BMSA01-T7-16-C11 Brassica napus Full-length cDNA Library Brassica napus cDNA, mRNA sequence.
EG020964.1:94-113
GAGAGAGAGAGAGAGATGAACAACGCCGGC94GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
OL1319R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1319, mRNA sequence.
EH414388.1:82-101
GAGAGAGAGAGAGAGATGAACAACGCCGGC82GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
BNAR01GH_T3_001_A06_09NOV2006_048 Brassica napus BNARO1GH Brassica napus cDNA 5', mRNA sequence.
ES899818.1:49-68
AGTTGACTTATCGCGATGAACAACGCCGGC49GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
49RDOAT_UP_076_G03_30JAN2006_019 Brassica oleracea 49RDOAT Brassica oleracea cDNA 5', mRNA sequence.
ES949449.1:21-40
GAGAGATGAACAACGCCGGC21GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
DHBN8DCT_UP_003_G05_19FEB2005_035 Brassica napus DHBN8DCT Brassica napus cDNA 5', mRNA sequence.
EV013027.1:66-85
AGTTGACTTATCGCGATGAACAACGCCGGC66GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
0121210 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115898.1:134-153
GAGAGAGAGAGAGAGATGAACAACGCCGGC134GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
BN18DYSC_UP_127_B07_1APR2008_061 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG563621.1:63-82
AGTTGACTTATCGCGATGAACAACGCCGGC63GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
BN18DYSC_UP_139_F04_3APR2008_022 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG564714.1:92-111
GAGAGAGAGAGAGAGATGAACAACGCCGGC92GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
BOT01-39E8TF BOT01 Brassica oleracea genomic clone BOT01-39E8, genomic survey sequence.
FI707227.1:69-88
GAGAGAGAGAGAGAGATGAACAACGCCGGC69GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
Brassica napus cultivar Huyou15 mitogen-activated protein kinase 3 mRNA, complete cds.
AY642433.1:169-188
GAGAGAGAGAGAGAGATGAACAACGCCGGC169GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:52782600-52782619
GAGAGAGAGAGAGAGATGAACAACGCCGGC52782600GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
Brassica napus mitogen-activated protein kinase 3.1 (MPK3.1) mRNA, complete cds.
JQ708040.1:16-35
ATGAACAACGCCGGC16GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
Brassica napus cultivar Zhongshuang9 mitogen-activated protein kinase 3 (MPK3) mRNA, complete cds.
KU363194.1:169-188
GAGAGAGAGAGAGAGATGAACAACGCCGGC169GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:53150559-53150578
GAGAGAGAGAGAGAGATGAACAACGCCGGC53150559GGCCAATATCCAGATTTTCCGGCGGTGCAGACGCACGGAGGACAGTTCAT
Ischnura elegans genome assembly, chromosome: 7.
OV121107.1:81394386-81394405
ACGCTGCTATCAGTTGGCTAATCTTTGCGA81394386GGCCAATATCCAGATTTTCCCGAAAATTTACCAAGGTCATTAAGGATTTT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:13603704-13603723
ATGAACTGTCCTCCGTGCGTCTGCACCGCC13603704GGAAAATCTGGATATTGGCCGCCGGCGTTGTTCATCGCGATAAGTCAACT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:21803602-21803621
ATGAACTGTCCTCCGTGCGTCTGCACCGCC21803602GGAAAATCTGGATATTGGCCGCCGGCGTTGTTCATCTCTCTCTCTCTCTC
Brassica napus genome assembly, chromosome: A06.
HG994360.1:12165022-12165041
ATGAACTGTCCTCCGTGCGTCTGCACCGCC12165022GGAAAATCTGGATATTGGCCGCCGGCGTTGTTCATCGCGATAAGTCAACT
Thera britannica genome assembly, chromosome: 7.
OW618040.2:14707404-14707423
ATCGTCATCAGTCTCATTGATATTACTGCT14707404GGAAAATCTGGATATTGGCCTCACCCTTATTATACAGCAAACCTGAAGTT
Thera obeliscata genome assembly, chromosome: 8.
OX387919.1:16828909-16828928
ATCGTCATCAGTCTCATTGATATTACTGCT16828909GGAAAATCTGGATATTGGCCTCACCCTTATTATACAGCAAACCTGAAGTT

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