GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:11:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 33 from patent US 7268276.
EA289035.1:118-137
TAAAACCTAGTTGGTTTAATATGGTGATGG118GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
Sequence 86 from patent US 7268276.
EA289088.1:88-107
TAAAACCTAGTTGGTTTAATATGGTGATGG88GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
Sequence 149 from patent US 7268276.
EA289148.1:93-112
TAAAACCTAGTTGGTTTAATATGGTGATGG93GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
Sequence 150 from patent US 7268276.
EA289149.1:115-134
TAAAACCTAGTTGGTTTAATATGGTGATGG115GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BN15.024P04F020213 BN15 Brassica napus cDNA clone BN15024P04, mRNA sequence.
CD815017.1:81-100
TAAAACCTAGTTGGTTTAATATGGTGATGG81GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BN20.042G13F011127 BN20 Brassica napus cDNA clone BN20042G13, mRNA sequence.
CD817576.1:86-105
TAAAACCTAGTTGGTTTAATATGGTGATGG86GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BN20.042M03F011127 BN20 Brassica napus cDNA clone BN20042M03, mRNA sequence.
CD817671.1:84-103
TAAAACCTAGTTGGTTTAATATGGTGATGG84GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BN20.053B04F020327 BN20 Brassica napus cDNA clone BN20053B04, mRNA sequence.
CD820558.1:85-104
TAAAACCTAGTTGGTTTAATATGGTGATGG85GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BN25.062K12F011130 BN25 Brassica napus cDNA clone BN25062K12, mRNA sequence.
CD826059.1:82-101
TAAAACCTAGTTGGTTTAATATGGTGATGG82GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BN25.067C03F020123 BN25 Brassica napus cDNA clone BN25067C03, mRNA sequence.
CD827341.1:84-103
TAAAACCTAGTTGGTTTAATATGGTGATGG84GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BN25.067K06F020123 BN25 Brassica napus cDNA clone BN25067K06, mRNA sequence.
CD827494.1:84-103
TAAAACCTAGTTGGTTTAATATGGTGATGG84GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BN40.063N03F011228 BN40 Brassica napus cDNA clone BN40063N03, mRNA sequence.
CD832565.1:86-105
AAAACCTAGTTTGGTTTAATATGGTGATGG86GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCGGACGGTCCT
BN45.046C16F011229 BN45 Brassica napus cDNA clone BN45046C16, mRNA sequence.
CD835633.1:86-105
TAAAACCTAGTTGGTTTAATATGGTGATGG86GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BN45.049K04F020103 BN45 Brassica napus cDNA clone BN45049K04, mRNA sequence.
CD836710.1:85-104
TAAAACCTAGTTGGTTTAATATGGTGATGG85GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BN45.052E01F020104 BN45 Brassica napus cDNA clone BN45052E01, mRNA sequence.
CD837447.1:90-109
TAAAACCTAGTTGGTTTAATATGGTGATGG90GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BN45.052L07F020104 BN45 Brassica napus cDNA clone BN45052L07, mRNA sequence.
CD837553.1:85-104
TAAAACCTAGTTGGTTTAATATGGTGATGG85GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
RFO2.134G16F011010 RFO2 Brassica napus cDNA clone RFO2134G16, mRNA sequence.
CD843875.1:85-104
TAAAACCTAGTTGGTTTAATATGGTGATGG85GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
15ACDHYS_UP_028_F01_21OCT2004_005 Brassica napus 15ACDHYS Brassica napus cDNA 5', mRNA sequence.
EE402286.1:88-107
TAAAACCTAGTTGGTTTAATATGGTGATGG88GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BNSCS4CT_UP_030_B06_19JAN2005_046 Brassica napus seed coat BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EE469906.1:84-103
TAAAACCTAGTTGGTTTAATATGGTGATGG84GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BNSCS5CT_UP_023_H10_21JAN2005_066 Brassica napus seed coat BNSCS5CT Brassica napus cDNA 5', mRNA sequence.
EE472362.1:23-42
AGTTGGTTTAATATGGTGATGG23GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
EST5344 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B248D081, mRNA sequence.
EL627837.1:137-156
TAAAACCTAGTTGGTTTAATATGGTGATGG137GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BNSCS3CT_UP_223_B07_14MAY2007_061 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV054515.1:83-102
TAAAACCTAGTTGGTTTAATATGGTGATGG83GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BNSCS3CT_UP_279_C03_19MAY2007_027 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV059018.1:81-100
TAAAACCTAGTTGGTTTAATATGGTGATGG81GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BNSCS4CT_UP_069_G05_18MAY2007_035 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV063634.1:79-98
TAAAACCTAGTTGGTTTAATATGGTGATGG79GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BNSCS4CT_UP_080_D04_18MAY2007_026 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV064486.1:84-103
TAAAACCTAGTTGGTTTAATATGGTGATGG84GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BNSCS4CT_UP_116_E02_20MAY2007_008 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV067355.1:85-104
TAAAACCTAGTTGGTTTAATATGGTGATGG85GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BNSCS4CT_UP_197_B09_23MAY2007_077 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV073568.1:80-99
TAAAACCTAGTTGGTTTAATATGGTGATGG80GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BNSCS4CT_UP_253_F02_24MAY2007_006 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV077870.1:89-108
TAAAACCTAGTTGGTTTAATATGGTGATGG89GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BNSCS4CT_UP_259_G02_26MAY2007_004 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV078327.1:85-104
TAAAACCTAGTTGGTTTAATATGGTGACGG85GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BNSCS4CT_UP_272_D06_26MAY2007_042 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV079263.1:83-102
TAAAACCTAGTTGGTTTAATATGGTGATGG83GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BR001993 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-003A11 5', mRNA sequence.
EX017349.1:42-61
TAAAACCTAGTTGGTTTAATATGGTGATGG42GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BR023797 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-061G11 5', mRNA sequence.
EX039153.1:65-84
TAAAACCTAGTTGGTTTAATATGGTGATGG65GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BR036853 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-108G06 5', mRNA sequence.
EX052209.1:45-64
TAAAACCTAGTTGGTTTAATATGGTGATGG45GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BR037748 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-120C06 5', mRNA sequence.
EX053104.1:23-42
AGTTGGTTTAATATGGTGATGG23GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BR041817 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-027A11 5', mRNA sequence.
EX057173.1:13-32
ATATGGTGATGG13GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BR071897 pistil cDNA library KCOW Brassica rapa subsp. pekinensis cDNA clone KCOW-17A02 5', mRNA sequence.
EX117198.1:84-103
TAAAACCTAGTTGGTTTAATATGGTGATGG84GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BN18DYSC_UP_027_A02_18FEB2008_016 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG555196.1:49-68
TAAAACCTAGTTGGTTTAATATGGTGATGG49GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF12F10, 5'-end sequence.
FY067778.1:85-104
TAAAACCTAGTTGGTTTAATATGGTGATGG85GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
a06_04na_1g.s 04na Brassica napus cDNA clone a06_04na_1g 5, mRNA sequence.
GT076463.1:71-90
TAAAACCTAGTTGGTTTAATATGGTGATGG71GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
a06_04na_1i.s 04na Brassica napus cDNA clone a06_04na_1i 5, mRNA sequence.
GT076464.1:66-85
TAAAACCTAGTTGGTTTAATATGGTGATGG66GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
a12_04na_1b.s 04na Brassica napus cDNA clone a12_04na_1b 5, mRNA sequence.
GT076544.1:74-93
TAAAACCTAGTTGGTTTAATATGGTGATGG74GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
c08_04na_1f.s 04na Brassica napus cDNA clone c08_04na_1f 5, mRNA sequence.
GT076789.1:54-73
TTAAACCTAGCTGGTTTAATATGGTGATGG54GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
g05_04na_1i.s 04na Brassica napus cDNA clone g05_04na_1i 5, mRNA sequence.
GT077394.1:47-66
TTAAACCTAGTTGGTTTAATATGGTGATGG47GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
h03_04na_1a.s 04na Brassica napus cDNA clone h03_04na_1a 5, mRNA sequence.
GT077513.1:35-54
TTAAAACCTAGTTGGTTAATATGGTGATGG35GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
h04_04na_2a.s 04na Brassica napus cDNA clone h04_04na_2a 5, mRNA sequence.
GT077537.1:9-28
GGTGATGG9GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
f12_11na_1f.s 11na Brassica napus cDNA clone f12_11na_1f 5, mRNA sequence.
GT080344.1:28-47
AACCTAGTTGGTTTAATATGGTGATGG28GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
0271072 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO962428.1:138-157
TAAAACCTAGTTGGTTTAATATGGTGATGG138GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
BNAESTF756 Mustard flower buds Brassica rapa cDNA clone F0756, mRNA sequence.
L33675.1:10-29
TGGTGATGG10GGCCTTCTTCGTTGGATGAGATCAAAGGCACAGAGAGCAGACGGTCCTGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_39391.
FX753306.1:77-96
TAAAACCTAGTTGGTTTAATATGGTGATGG77GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
Brassica napus chalcone synthase B1 (CHSB1) mRNA, complete cds.
AF076335.1:85-104
TAAAACCTAGTTGGTTTAATATGGTGATGG85GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:2630982-2631001
TAAAACCTAGTTGGTTTAATATGGTGATGG2630982GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
Brassica napus chalcone synthase (CHS) mRNA, complete cds.
DQ767948.1:11-30
ATGGTGATGG11GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
Brassica napus genome assembly, chromosome: A02.
HG994356.1:2452285-2452304
TAAAACCTAGTTGGTTTAATATGGTGATGG2452285GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
Brassica rapa genome, scaffold: A02.
LR031573.1:2468243-2468262
TAAAACCTAGTTGGTTTAATATGGTGATGG2468243GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:2498472-2498491
TAAAACCTAGTTGGTTTAATATGGTGATGG2498472GGCCTTCTTCGTTGGATGAGATCAGAAAGGCACAGAGAGCAGACGGTCCT
Pyrrhosoma nymphula genome assembly, chromosome: 3.
OY754329.1:35012475-35012494
CTTTGGACGATACGCAGTCCATTTCGAATT35012475GGCCTTCTTCGTTGGATGAGTTGGCCACGTTGGAAGAGGCGGTGGAGGCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGCCTTCTTCGTTGGATGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCCTTCTTCGTTGGATGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.919 | 2.910 | search_plus_done; http://172.18.8.135:50400/match?q=GGCCTTCTTCGTTGGATGAG&k=0&no_gap=0&offset=0&limit=50
3.035 | 0.115 | search_minus_done; http://172.18.8.135:50400/match?q=CTCATCCAACGAAGAAGGCC&k=0&no_gap=0&offset=0&limit=0
3.035 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).