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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 21:43:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

g041b05a Gossypium hirsutum 5-25 dpa fiber library Gossypium hirsutum cDNA, mRNA sequence.
DR044145.1:27-46
GACGGGAACTTTTATCAAGGGAATGA27GGCGATTTGGTAAGGAGTAAATTTTTNAATGTGCGTTATCAGGAAGCAAG
GH_ON36C01.r GH_ON Gossypium hirsutum cDNA clone GH_ON36C01 3', mRNA sequence.
DT458421.1:627-646
AAACTCACGGGAACTTTTATCAAGGAATGA627GGCGATTTGGTAAGGAGTAAATTTTTTTTGTTTTCGTGTATGACTGTAAA
UFL_299_03 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES817818.1:358-377
AAACTCACGGGAACTTTTATCAAGGAATGA358GGCGATTTGGTAAGGAGTAAATTTTTTTTGTTTTCGTGTATGACTGTAAA
GH_TBh026H11r Gossypium hirsutum TM-1 BAC library Gossypium hirsutum genomic, genomic survey sequence.
KO246704.1:190-209
AAACTCACGGGAACTTTTATCAAGGAATGA190GGCGATTTGGTAAGGAGTAAATTTTTTAATGTGCGTTATCAGGAAGCAAG
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:44421433-44421452
AAACTCACGGGAACTTTTATCAAGGAATGA44421433GGCGATTTGGTAAGGAGTAAATTTTTTAATATGCGTTATCAGGAAGCAAG
GR__Ea07B16.r GR__Ea Gossypium raimondii cDNA clone GR__Ea07B16 3', mRNA sequence.
CO088236.1:231-250
TTTACAGTCATACACGAAAACAAAAAAAAT231TTACTCCTTACCAAATCGCCTCATTCCTTGATAAAAGTTCCCGTGAGTTT
GR__Eb0038G17.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0038G17 5', mRNA sequence.
CO107298.1:231-250
TTTACAGTCATACACGAAAACAAAAAAAAT231TTACTCCTTACCAAATCGCCTCATTCCTTGATAAAAGTTCCCGTGAGTTT
GR__Eb0048J16.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0048J16 5', mRNA sequence.
CO112126.1:210-229
TTTACAGTCATACACGAAAACAAAAAAAAT210TTACTCCTTACCAAATCGCCTCATTCTTGATAAAAGTTCCCGTGAGTTTG
GH_ON36C01.f GH_ON Gossypium hirsutum cDNA clone GH_ON36C01 5', mRNA sequence.
DT458420.1:74-93
TTTACAGTCATACACGAAAACAAAAAAAAT74TTACTCCTTACCAAATCGCCTCATTCCTTGATAAAAGTTCCCGTGAGTTT
GH_ONEFM_01-01-04R_A02_InvR_17Feb04_016_R Fiber - 1 day after anthesis Gossypium hirsutum cDNA, mRNA sequence.
DW228284.1:67-86
TTTACAGTCATACACGAAAACAAAAAAAAT67TTACTCCTTACCAAATCGCCTCATTCCTTGATAAAAGTTCCCGTGAGTTT
C02_433573.26.S1104162121.anther-SP15865 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK697226.1:206-225
CTTGCTTCCTGATAACGCACATTAAAAAAT206TTACTCCTTACCAAATCGCCTCATTCCTTGATAAAAGTTCCCGTGAGTTT
D11_425241.47.S1104112046.anther-SP8687 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK699348.1:194-213
TTTACAGTCATACACGAAAACAAAAAAAAT194TTACTCCTTACCAAATCGCCTCATTCCTTGATAAAAGTTCCCGTGAGTTT
Gossypioides kirkii chromosome KI_06.
CP032248.1:22516609-22516628
TTACAGTCATACACGAAAACAAAAAAAAAT22516609TTACTCCTTACCAAATCGCCTCATTCCTTGATAAAAGTTCCTGAACAAGT
Gossypium herbaceum isolate GPA1alz chromosome 2.
CP106707.1:50544048-50544067
CTTGCTTCCTGATAACGCATATTAAAAAAT50544048TTACTCCTTACCAAATCGCCTCATTCCTTGATAAAAGTTCCCGTGAGTTT
Gossypium bickii isolate GPG1lz chromosome 2.
CP106718.1:67834927-67834946
TTTACAGTCATACACGAAAACAAAAAAAAT67834927TTACTCCTTACCAAATCGCCTCATTCCTTGATAAAAGTTCCCGTGAGTTT
Gossypium rotundifolium isolate GPK201 chromosome 2.
CP106723.1:84990517-84990536
TTTACAGTCATACACGAAAACAAAAAAATT84990517TTACTCCTTACCAAATCGCCTCATTCCTTGATAAAAGTTCCCGTGAGTTT

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