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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 06:25:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 585 from patent US 9828608.
MI249980.1:674-693
CCTGCCGCCGCCGTACATGAACATGGTCAC674GGCGGACTACATGAACCAGTACCGCCCGCCGCCGCCGCCGCCCCCGGCGT
Sequence 585 from patent US 11667925.
OT094457.1:674-693
CCTGCCGCCGCCGTACATGAACATGGTCAC674GGCGGACTACATGAACCAGTACCGCCCGCCGCCGCCGCCGCCCCCGGCGT
CCGC3022.b1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virgatum cDNA clone CCGC3022 5', mRNA sequence.
FL748239.1:559-578
CATGCCGCCGCCGTACATGAACATGATCAC559GGCGGACTACATGAACCAGTACCGCCCGCCGCCGCCGCCGCCCCCGGCGT
CCGG6108.b1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgatum cDNA clone CCGG6108 5', mRNA sequence.
FL806371.1:85-104
CATGCCGCCGCCGTACATGAACATGATCAC85GGCGGACTACATGAACCAGTACCGCCCGCCACCGCTGCCGCCCCGGCGTA
CCGN1615.b1 CCGN Panicum virgatum etiolated seedlings (L) Panicum virgatum cDNA clone CCGN1615 5', mRNA sequence.
FL876709.1:126-145
CATGCCGCCGCCGTACATGAACATGATCAC126GGCGGACTACATGAACCAGTACCGCCCGCCGCCGCCGCCGCCCCCGGCGT
CCGP7325.b1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP7325 5', mRNA sequence.
FL935588.1:77-96
CCTGCCGCCGCCGTACATGAACATGGTCAC77GGCGGACTACATGAACCAGTACCGCCCGCCGCCGCCGCCGCCCCCGGCGT
CCGP13621.b1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP13621 5', mRNA sequence.
FL945226.1:321-340
CCTGCCGCCGCCGTACATGAACATGGTCAC321GGCGGACTACATGAACCAGTACCGCCCGCCGCCGCCGCCGCCCCCGGCGT
CCGP17188.b1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP17188 5', mRNA sequence.
FL950898.1:403-422
CCTGCCGCCGCCGTACATGAACATGGTCAC403GGCGGACTACATGAACCAGTACCGCCCGCCGCCGCCGCCGCCCCCGGCGT
CCGP9607.b1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP9607 5', mRNA sequence.
FL953121.1:208-227
CATGCCGCCGCCGTACATGAACATGATCAC208GGCGGACTACATGAACCAGTACCGCCCGCCGCCGCCGCCGCCCCCGGCGT
Paspalum notatum var. saurae isolate R1 chromosome 02.
CP144746.1:1634026-1634045
GCCGCCGCCGTACATGAACATGATCACTGC1634026GGCGGACTACATGAACCAGTACCGCCCGCCGCCGCCGGCCGCGTACCACC
CBYX7744.g1 CBYX Panicum virgatum Kanlow callus Panicum virgatum cDNA clone CBYX7744 3', mRNA sequence.
FE608153.1:363-382
ACGCCGGGGGCGGCGGCGGCGGCGGGCGGT363ACTGGTTCATGTAGTCCGCCGTGACCATGTTCATGTACGGCGGCGGCAGG
CCGC3022.g1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virgatum cDNA clone CCGC3022 3', mRNA sequence.
FL748240.1:390-409
ACGCCGGGGGCGGCGGCGGCGGCGGGCGGT390ACTGGTTCATGTAGTCCGCCGTGATCATGTTCATGTACGGCGGCGGCATG
CCGC8808.g1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virgatum cDNA clone CCGC8808 3', mRNA sequence.
FL759412.1:394-413
ACGCCGGGGGCGGCGGCGGCGGCGGGCGGT394ACTGGTTCATGTAGTCCGCCGTGATCATGTTCATGTACGGTGGCGGCATG
CCGF15425.g1 CCGF Panicum virgatum early floral buds + reproductive tissue (L) Panicum virgatum cDNA clone CCGF15425 3', mRNA sequence.
FL788504.1:397-416
ACGCCGGGGGCGGCGGCGGCGGCGGGCGGT397ACTGGTTCATGTAGTCCGCCGTGATCATGTTCATGTACGGCGGCGGCATG
CCGG6741.g1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgatum cDNA clone CCGG6741 3', mRNA sequence.
FL807627.1:378-397
ACGCCGGGGGCGGCGGCGGCGGCGGGCGGT378ACTGGTTCATGTAGTCCGCCGTGACCATGTTCATGTACGGCGGCGGCAGG
CCGH21607.g1 CCGH Panicum virgatum late flowering buds + seed development (L) Panicum virgatum cDNA clone CCGH21607 3', mRNA sequence.
FL840173.1:301-320
ACGCCGGGGGCGGCGGCGGCGGCGGGCGGT301ACTGGTTCATGTAGTCCGCCGTGACCATGTTCATGTACGGCGGCGGCAGG
CCGN13039.b1 CCGN Panicum virgatum etiolated seedlings (L) Panicum virgatum cDNA clone CCGN13039 5', mRNA sequence.
FL897329.1:297-316
ACGCCGGGGGCGGCGGCGGCGGCGGGCGGT297ACTGGTTCATGTAGTCCGCCGTGACCATGTTCATGTACGGCGGCGGCAGG
CCGN15275.g1 CCGN Panicum virgatum etiolated seedlings (L) Panicum virgatum cDNA clone CCGN15275 3', mRNA sequence.
FL900788.1:358-377
ACGCCGGGGGCGGCGGCGGCGGCGGGCGGT358ACTGGTTCATGTAGTCCGCCGTGACCATGTTCATGTACGGCGGCGGCAGG
CCGO14833.g1 CCGO Panicum virgatum root (H) Panicum virgatum cDNA clone CCGO14833 3', mRNA sequence.
FL923234.1:354-373
ACGCCGGGGGCGGCGGCGGCGGCGGGCGGT354ACTGGTTCATGTAGTCCGCCGTGACCATGTTCATGTACGGCGGCGGCAGG
CCGP17188.g1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP17188 3', mRNA sequence.
FL950899.1:295-314
ACGCCGGGGGCGGCGGCGGCGGCGGGCGGT295ACTGGTTCATGTAGTCCGCCGTGACCATGTTCATGTACGGCGGCGGCAGG
CCGP9607.g1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP9607 3', mRNA sequence.
FL953122.1:387-406
ACGCCGGGGGCGGCGGCGGCGGCGGGCGGT387ACTGGTTCATGTAGTCCGCCGTGATCATGTTCATGTACGGCGGCGGCATG
Setaria viridis cultivar ME034v chromosome 9.
CP050803.1:55136065-55136084
ACGCGGGCGGCGGTGGCGGTGGTGGGCGGT55136065ACTGGTTCATGTAGTCCGCCGTGACCATGTTCATGTACTGCGGCGGCAGG
Cenchrus purpureus cultivar elephant grass chromosome A5.
CP053458.1:28575283-28575302
ACGCCGGCGGGGGTGGCGGCGGCGGGCGGT28575283ACTGGTTCATGTAGTCCGCCGTGATCATGTTCATGTACGGCGGCGGCGGC
Cenchrus purpureus cultivar elephant grass chromosome B5.
CP053465.1:135757851-135757870
ACGCCGGCGGCGGTGGCGGCGGCGGGCGGT135757851ACTGGTTCATGTAGTCCGCCGTGATCATGTTCATGTACGGCGGCGGCGGC
Digitaria exilis genome assembly, chromosome: 9A.
LR994620.1:51266912-51266931
GGTAGTACGCCGACGGCGGCGGCGGGCGGT51266912ACTGGTTCATGTAGTCCGCCGTGATCATGTTCATGTACGGCGGCGGCGGC
Digitaria exilis genome assembly, chromosome: 9B.
LR994621.1:46899655-46899674
GGTAGTACGCCGACGGCGGCGGCGGGCGGT46899655ACTGGTTCATGTAGTCCGCCGTGATCATGTTCATGTACGGCGGGGGCATG
Cenchrus americanus genome assembly, chromosome: PMC23DB5.
OX387243.1:168112072-168112091
ACGCCGGCGGCGGCGGCGGCGGCGGGCGGT168112072ACTGGTTCATGTAGTCCGCCGTGATCATGCTCATGTACGGCGGCGGCGGC
Cenchrus americanus genome assembly, chromosome: Pg5.
OZ001401.1:171815961-171815980
ACGCCGGCGGCGGCGGCGGCGGCGGGCGGT171815961ACTGGTTCATGTAGTCCGCCGTGATCATGCTCATGTACGGCGGCGGCGGC
Cenchrus americanus genome assembly, chromosome: Pg5.
OZ001409.1:174240034-174240053
ACGCCGGCGGCGGCGGCGGCGGCGGGCGGT174240034ACTGGTTCATGTAGTCCGCCGTGATCATGCTCATGTACGGCGGCGGCGGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGCGGACTACATGAACCAGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCGGACTACATGAACCAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.803 | 0.795 | search_plus_done; http://172.18.8.135:50400/match?q=GGCGGACTACATGAACCAGT&k=0&no_gap=0&offset=0&limit=50
1.741 | 0.938 | search_minus_done; http://172.18.8.135:50400/match?q=ACTGGTTCATGTAGTCCGCC&k=0&no_gap=0&offset=0&limit=40
1.754 | 0.013 | cgi_end;

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