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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 03:56:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus x robusta genome assembly, chromosome: 12.
OY720336.1:4280195-4280214
AGGCATCACAGGGTGTGCTGTCTATCAAGA4280195GGCGTCGAGTTATTGGCTTTAATGTTGACTCATTTTCTGATAACACATGA
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:4355866-4355885
AGGCATCATAGGGCATGCTGTCTATCAAGA4355866GGCGTCGAGTTATTGGCTTTAATGTTGACTCATTTTCTGATAACACATGA
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:4386589-4386608
AGGCATCATAGGGCGTGCTGTCTATCAAGA4386589GGCGTCGAGTTATTGGCTTTAATGTTGACTCATTTTCTGATAACACATGA
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:4318870-4318889
AGGCATCAGAGGGCGTGCTGTCTATCAAGA4318870GGCGTCGAGTTATTGGCTTTAATGTTGACTCATTTTCTGATAACACATGA
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:3319119-3319138
AGGCATCATAGGGCGTGCTGTCTATCAAGA3319119GGCGTCGAGTTATTGGCTTTAATGTTGACTCATTTTCTGATAACACATAA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:40129542-40129561
TCATGTGTTATCAGAAAATGAGTCAACATT40129542AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCTATGATGCCT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:40158709-40158728
TCATGTGTTATGAGAAAATGAGTCAACATT40158709AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCTATGATGCCT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:29590544-29590563
TCATGTGTTATCAGAAAATGAGTCAACATT29590544AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCCATGATGCCT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:29627627-29627646
TCATGTGTTATCAGAAAATGAGTCAACATT29627627AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCCATGATGCCT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:27948711-27948730
TCATGTGTTATCAGAAAATGAGTCAACATT27948711AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCTATGATGCCT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:27972560-27972579
TCATGTGTTATCAGAAAATGAGTCAACATT27972560AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCTATGATGCCT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:29572346-29572365
TCATGTGTTATCAGAAAATGAGTCAACATT29572346AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCTATGATGCCT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:29654845-29654864
TCATGTGTTATCAGAAAATGAGTCAACATT29654845AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCTGTGATGCCT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:29235641-29235660
TCATGTGTTATCAGAAAATGAGTCAACATT29235641AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCCATGGTGCCT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:29268817-29268836
TCATGTGTTATCAGAAAATGAGTCAACAAT29268817AAAGCCAATAACTCGACGCCTCTTGATAGACAGCATGCCCTATGATGCCT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:27964187-27964206
TCATGTGTTATCGGAAAATGAGTCAACATT27964187AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCTATGATGCCT
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:25949235-25949254
TCATGTGTTATCAGAAAATGAGTCAACATT25949235AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCCATGGTGCCT
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:25978167-25978186
TCATGTGTTATCAGAAAATGAGTCAACATT25978167AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCCATGGTGCCT
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:26012087-26012106
TCATGTGTTATCAGAAAATGAGTCAACATT26012087AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACACCCTGTGATGCCT
Malus domestica genome assembly, chromosome: 1.
OU696677.1:25983630-25983649
TCATGTGTTATCAGAAAATGAGTCAACATT25983630AAAGCCAATAACTCGACGCCTCTTGATAGACAGCATGCCCTATGATGCCT
Malus domestica genome assembly, chromosome: 1.
OU696677.1:26004698-26004717
TCATGCGTTATCAGAAAATGAGTCAACATT26004698AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCTATGATGCCT
Malus domestica genome assembly, chromosome: 1.
OU696677.1:26069086-26069105
TCATGTGTTATCAGAAAATGAGTCAACAAT26069086AAAGCCAATAACTCGACGCCTCTTGATAGACAGCATGCCCTATGATGCCT
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29754816-29754835
TCATGTGTTATCAGAAAATGAGTCAACATT29754816AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCCATGGTGCCT
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29783748-29783767
TCATGTGTTATCAGAAAATGAGTCAACATT29783748AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCCATGGTGCCT
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29817668-29817687
TCATGTGTTATCAGAAAATGAGTCAACATT29817668AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACACCCTGTGATGCCT
Malus domestica genome assembly, chromosome: 1.
OU744953.1:29158034-29158053
TCATGTGTTATCAGAAAATGAGTCAACATT29158034AAAGCCAATAACTCGACGCCTCTTGATAGACAGCATGCCCTATGATGCCT
Malus domestica genome assembly, chromosome: 1.
OU744953.1:29219865-29219884
TCATGTGTTATCAGAAAATGAGTCAACATT29219865AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACACCCTGTGATGCCT
Malus domestica genome assembly, chromosome: 1.
OU744991.1:26228484-26228503
TCATGTGTTATCAGAAAATGAGTCAACATT26228484AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCCATGGTGCCT
Malus domestica genome assembly, chromosome: 1.
OU744991.1:26257422-26257441
TCATGTGTTATCAGAAAATGAGTCAACATT26257422AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACGCCCCATGGTGCCT
Malus domestica genome assembly, chromosome: 1.
OU744991.1:26291342-26291361
TCATGTGTTATCAGAAAATGAGTCAACATT26291342AAAGCCAATAACTCGACGCCTCTTGATAGACAGCACACCCTGTGATGCCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGCGTCGAGTTATTGGCTTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCGTCGAGTTATTGGCTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.095 | 0.086 | search_plus_done; http://172.18.8.135:50400/match?q=GGCGTCGAGTTATTGGCTTT&k=0&no_gap=0&offset=0&limit=50
0.122 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=AAAGCCAATAACTCGACGCC&k=0&no_gap=0&offset=0&limit=45
0.139 | 0.016 | cgi_end;

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