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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 15:28:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mdrta1013A05_e34621.g1 Apple_EST_Mdrta Malus domestica cDNA 5', mRNA sequence.
GO548523.1:132-154
AACAAATTACAGTAGCCTTCCTTTCAATTA132GGCTCGAGAGTTCGAAAATTACAGTAGCCTGAAGGGAACAAGTAGATACATAC
Pyrus pyrifolia mRNA, clone: NFR3_09_14, 3' end sequence, expressed in fruit.
HX740385.1:79-101
AACAAATTACAGTAGCCTTCCTTTCAGTTA79GGCTCGAGAGTTCGAAAATTACAGTAGCCTGAAGGGAACAAAGGGACTAACTA
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:5290592-5290614
AACAAATTACAGTAGCCTTCCTTTCAATTA5290592GGCTCGAGAGTTCGAAAATTACAGTAGCCTGAAGGGAACAAGTAGATACATAC
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:5282371-5282393
AACAAATTACAGTAGCCTTCCTTTCAATTA5282371GGCTCGAGAGTTCGAAAATTACAGTAGCCTGAAGGGAACAAGTAGATACATAC
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:5647343-5647365
AACAAATTACAGTAGCCTTCCTTTCAATTA5647343GGCTCGAGAGTTCGAAAATTACAGTAGCCTGAAGGGAACAAGTAGATACATAC
Malus x robusta genome assembly, chromosome: 1.
OY720325.1:5196928-5196950
AACAAATTACAGTAGCCTTCCTTTCAATTA5196928GGCTCGAGAGTTCGAAAATTACAGTAGCCTGAAGGGAACAAGTAGATACATAC
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH040_09779m, 5' end sequence.
AB450717.1:450-472
TAGTTAGTCCCTTTGTTCCCTTCAGGCTAC450TGTAATTTTCGAACTCTCGAGCCTAACTGAAAGGAAGGCTACTGTAATTTGTT
TSA: Pyrus pyrifolia mRNA, contig: contig_10748revcomp.
FX427350.1:95-117
TAGTTAGTCCCTTTGTTCCCTTCAGGCTAC95TGTAATTTTCGAACTCTCGAGCCTAACTGAAAGGAAGGCTACTGTAATTTGTT
TSA: Pyrus communis mRNA, contig: lc5750.
FX614337.1:557-579
TAGTTAGTCCCTTTGTTCCCTTCAGGCTAC557TGTAATTTTCGAACTCTCGAGCCTAACTGAAAGGNTACTGTAGTTTGNGNAAC
TSA: Pyrus x bretschneideri Unigene9672_XinShao mRNA sequence.
JR604786.1:1149-1171
TAGTTAGTCCCTTTGTTCCCTTCAGGCTAC1149TGTAATTTTCGAACTCTCGAGCCTAACTGAAAGGAAGGCTACTGTAATTTGTT
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:50426392-50426414
GTATGTATCTACTTGTTCCCTTCAGGCTAC50426392TGTAATTTTCGAACTCTCGAGCCTAATTGAAAGGAAGGCTACTGTAATTTGTT
Malus domestica genome assembly, chromosome: 15.
OU744556.1:50186826-50186848
GTATGTATCTACTTGTTCCCTTCAGGCTAC50186826TGTAATTTTCGAACTCTCGAGCCTAATTGAAAGGAAGGCTACTGTAATTTGTT
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:39681212-39681234
TAGTTAGTCCCTTTGTTCCCTTCAGGCTAC39681212TGTAATTTTCGAACTCTCGAGCCTAACTGAAAGGAAGGCTACTGTAATTTGTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGCTCGAGAGTTCGAAAATTACA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCTCGAGAGTTCGAAAATTACA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.523 | 0.515 | search_plus_done; http://172.18.8.135:50400/match?q=GGCTCGAGAGTTCGAAAATTACA&k=0&no_gap=0&offset=0&limit=50
0.652 | 0.129 | search_minus_done; http://172.18.8.135:50400/match?q=TGTAATTTTCGAACTCTCGAGCC&k=0&no_gap=0&offset=0&limit=44
0.657 | 0.005 | cgi_end;

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