GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 03:44:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

MAG: Dehalococcoidales bacterium isolate bin1073 chromosome.
CP070832.1:198617-198636
TCATCCCGGTAGTAGGCAATATCCCCACCG198617GGCTCGGTATCCTCCAGTACCACTTCCTCTTTGGGTTTACCGAGTGAGAT
Mddb5006F17_e1369.g1 Mddb Malus domestica cDNA 5' similar to dbj|BAA94519.1| unnamed protein product [Oryza sativa (japonica cultivar-group)] dbj|BAB07903.1| putative receptor kinase [Oryza sativa (ja
GO565281.1:606-625
GGAAGACTTACGGGTGTCTTTCACTTCTGG606GGCTCGGTATCCTCCAGTACGCGCTGCTGGTGGGGGCGTTGGACCCATCA
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:1880411-1880430
GGAAGACTTACGGGTGTCTTTCACTTCTGG1880411GGCTCGGTATCCTCCAGTACGCGCTGCTGGTGGGGGCGTTGGACCCATCA
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:2161478-2161497
GGAGGACTTACGGGTGTCTTTCACTTCTGG2161478GGCTCGGTATCCTCCAGTACGCGCTGCTGGTGGGGGCATTGGACCCATCA
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:1616630-1616649
GGAAGACTTACGGGTGTCTTTCACTTCTGG1616630GGCTCGGTATCCTCCAGTACGCGCTGCTGGTGGGGGCATTGGACCCATCA
Mdfw2030e21.y1 Mdfw Malus domestica cDNA clone Mdfw2030e21 5' similar to TR:Q9SUQ3 Q9SUQ3 PUTATIVE RECEPTOR KINASE, mRNA sequence.
CN580628.1:112-131
TGATGGGTCCAACGCCCCCACCAGCAGCGC112GTACTGGAGGATACCGAGCCCCAGAAGTGAAAGACACCCGTAAGTCTTCC
TSA: Pyrus communis mRNA, contig: lc4701.
FX613288.1:52-71
TGATGGGTCCAATGCCCCCACCAGCAGCGC52GTACTGGAGGATACCGAGCCCCGGAAGTGAAAGACACCCGTAAGTCTTCC
TSA: Pyrus x bretschneideri Unigene89636_XinShao mRNA sequence.
JR673215.1:1285-1304
TGATGGGTCCAATGCCCCCACCAGCAGCGC1285GTACTGGAGGATACCGAGCCCCAGAAGTGAAAGACACCCGTAAGTCTTCC
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:42352924-42352943
TGATGGGTCCAACGCCCCCGCCAGCAGCGC42352924GTACTGGAGGATACCGAGCCCCAGAAGTGAAAGACACCCGTAAGTCTTCC
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:31808690-31808709
TGATGGGTCCAACGCCCCCACCAGCAGCGC31808690GTACTGGAGGATACCGAGCCCCAGAAGTGAAAGACACCCGTAAGTCTTCC
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:30102577-30102596
TGATGGGTCCAACGCCCCCACCAGCAGCGC30102577GTACTGGAGGATACCGAGCCCCAGAAGTGAAAGACACCCGTAAGTCTTCC
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:31870074-31870093
TGATGGGTCCAACGCCCCCACCAGCAGCGC31870074GTACTGGAGGATACCGAGCCCCAGAAGTGAAAGACACCCGTAAGTCTTCC
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:31439563-31439582
TGATGGGTCCAACGCCCCCACCAGCAGCGC31439563GTACTGGAGGATACCGAGCCCCAGAAGTGAAAGACACCCGTAAGTCTTCC
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:29891867-29891886
TGATGGGTCCAACGCCCCCACCAGCAGCGC29891867GTACTGGAGGATACCGAGCCCCAGAAGTGAAAGACACCCGTAAGTCTTCC
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:28312743-28312762
TGATGGGTCCAACGCCCCCACCAGCAGCGC28312743GTACTGGAGGATACCGAGCCCCAGAAGTGAAAGACACCCGTAAGTCTTCC
Malus domestica genome assembly, chromosome: 1.
OU696677.1:28263656-28263675
TGATGGGTCCAACGCCCCCACCAGCAGCGC28263656GTACTGGAGGATACCGAGCCCCAGAAGTGAAAGACACCCGTAAGTCTTCC
Malus domestica genome assembly, chromosome: 1.
OU744542.1:32033716-32033735
TGATGGGTCCAACGCCCCCACCAGCAGCGC32033716GTACTGGAGGATACCGAGCCCCAGAAGTGAAAGACACCCGTAAGTCTTCC
Malus domestica genome assembly, chromosome: 1.
OU744953.1:31630114-31630133
TGATGGGTCCAACGCCCCCACCAGCAGCGC31630114GTACTGGAGGATACCGAGCCCCAGAAGTGAAAGACACCCGTAAGTCTTCC
Malus domestica genome assembly, chromosome: 1.
OU744991.1:28506159-28506178
TGATGGGTCCAACGCCCCCACCAGCCGCGC28506159GTACTGGAGGATACCGAGCCCCAGAAGTGAAAGACACCCGTAAGTCTTCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGCTCGGTATCCTCCAGTAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCTCGGTATCCTCCAGTAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.188 | 0.180 | search_plus_done; http://172.18.8.135:50400/match?q=GGCTCGGTATCCTCCAGTAC&k=0&no_gap=0&offset=0&limit=50
0.287 | 0.099 | search_minus_done; http://172.18.8.135:50400/match?q=GTACTGGAGGATACCGAGCC&k=0&no_gap=0&offset=0&limit=45
0.296 | 0.009 | cgi_end;

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