GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:01:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH085A21, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces.
AC189613.1:16332-16351
GTCGTCCAAAGCCTCGTTCTCATCCCCCTT16332GGCTCTCCTCATCGTCAAAAGCCTCTTCTTCATTGCCCATTGGCTTTCTC
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:36961015-36961034
TCTCTCTCTCTCTCTCTCTCTCTCCCCCTT36961015GGCTCTCCTCATCGTCAAAAGCCTCGTTCTTATCCCCCTTGGCTCTCCTC
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:36961055-36961074
ATCGTCAAAAGCCTCGTTCTTATCCCCCTT36961055GGCTCTCCTCATCGTCAAAAGCCTCTTCTTCATTGCCCCTTGGCTTTCTC
odg82a11.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH932310.1:263-282
GAGAAAGCCAAGGGGCAATGAAGAAGAGGC263TTTTGACGATGAGGAGAGCCAAGGGGGATAAGAACGAGGCTTTTGACGAT
odg82a11.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH932310.1:303-322
GAGGAGAGCCAAGGGGGATAAGAACGAGGC303TTTTGACGATGAGGAGAGCCACGGGGGAGAGAGAGAGAGAGAGAGAGAGA
Brassica napus genome assembly, chromosome: C09.
HG994373.1:32050383-32050402
GAGAAAGCCAAGGGGCAATGAAGAAGAGGC32050383TTTTGACGATGAGGAGAGCCAAGGGGGATAAGAACGAGGCTTTTGACGAT
Brassica napus genome assembly, chromosome: C09.
HG994373.1:32050423-32050442
GAGGAGAGCCAAGGGGGATAAGAACGAGGC32050423TTTTGACGATGAGGAGAGCCAAGGGGGGGAGAGAGAGAGAGAGAGAGAGA
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:31979782-31979801
GAGAAAGCCAAGGGGCAATGAAGAAGAGGC31979782TTTTGACGATGAGGAGAGCCAAGGGGGATAAGAACGAGGCTTTTGACGAT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:31979822-31979841
GAGGAGAGCCAAGGGGGATAAGAACGAGGC31979822TTTTGACGATGAGGAGAGCCAAGGGGGAGAGAGAGAGAGAGAGAGAGAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGCTCTCCTCATCGTCAAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCTCTCCTCATCGTCAAAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.147 | 0.139 | search_plus_done; http://172.18.8.135:50400/match?q=GGCTCTCCTCATCGTCAAAA&k=0&no_gap=0&offset=0&limit=50
0.210 | 0.063 | search_minus_done; http://172.18.8.135:50400/match?q=TTTTGACGATGAGGAGAGCC&k=0&no_gap=0&offset=0&limit=47
0.214 | 0.004 | cgi_end;

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