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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:51:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Homo sapiens DNA, chromosome 20, nearly complete genome.
AP023480.1:2228043-2228060
CAGAGATGTTCTAAAGTCACAACAGAATGA2228043GGCTGGTGGGGAGAAAATCAATTTTGAAAAGGTGGTGGAGAGACAGGT
Homo sapiens isolate CHM13 chromosome 20.
CP068258.2:2327767-2327784
CAGAGATGTTCTAAAGTCACAACAGAATGA2327767GGCTGGTGGGGAGAAAATCAATTTTGAAAAGGTGGTGGAGAGACAGGT
Homo sapiens isolate NA24385 chromosome 20.
CP139522.1:2314690-2314707
CAGAGATGTTCTAAAGTCACAACAGAATGA2314690GGCTGGTGGGGAGAAAATCAATTTTGAAAAGGTGGTGGAGAGACAGGT
Homo sapiens isolate NA24385 chromosome 20.
CP139545.1:2314006-2314023
CAGAGATGTTCTAAAGTCACAACAGAATGA2314006GGCTGGTGGGGAGAAAATCAATTTTGAAAAGGTGGTGGAGAGACAGGT
Homo sapiens transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase) (TGM3) gene, complete cds.
EF102483.1:3585-3602
CAGAGATGTTCTAAAGTCACAACAGAATGA3585GGCTGGTGGGGAGAAAATCAATTTTGAAAAGGTGGTGGAGAGACAGGT
Heterocephalus glaber genome assembly, chromosome: 9.
OX090949.1:21912726-21912743
AAGACCTTCCATTTGCTCCCCCGCACTGAT21912726GGCTGGTGGGGAGAAAATCCTGAGCGTCTCCACATGTTCGATCAGAGA
Felis catus Senzu DNA, chromosome: A1, American Shorthair breed.
AP023152.1:231354918-231354935
CCAAGTGGCAGGTTTTGATGGTTTTCGGGG231354918GGCTGGTGGGGAGAAAATTCTTCCTTTTGCGAACGGTGGTTCCATTCA
Canis lupus genome assembly, chromosome: 20.
HG994401.1:35777717-35777734
CAAATGAGGTTTCCAGAGTGTCCATCACAT35777717GGCTGGTGGGGAGAAAATGGGGAGGAAGGGTTAGCAGTTCACAGACTG
Sylvilagus floridanus genome assembly, chromosome: 10.
OX463232.1:22207071-22207088
CCAGCAGCCCACTTCTGATTCCAGGCTGCT22207071GGCTGGTGGGGAGAAAATGACATCACCCTTGCTAGGTCTTTCTCCCCT
Erithacus rubecula genome assembly, chromosome: 14.
LR812117.1:1718272-1718289
AAGGGACCACTCTGTGCTGGGTGTCTGAGG1718272GGCTGGTGGGGAGAAAATGACCCAGAGAGGAGCTCCAGAGGCAAAACC
Anas platyrhynchos genome assembly, chromosome: 16.
LS423626.1:14328552-14328569
GCGGCCACGAGCTGCTCCCGAATCACCACG14328552GGCTGGTGGGGAGAAAATCGGCTCTGGGCAGGGAACCAGCACGGGGCC
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 11.
OU383784.1:1908395-1908412
TTCCAGCCACTCTGTGCTGGGTGTCTGAGG1908395GGCTGGTGGGGAGAAAATGACCCAGAGAGGAGCTCCGGAGGCAAAACC
Podarcis lilfordi genome assembly, chromosome: 5.
OX395130.1:29108050-29108067
AAGCACTGATGCATCAACAAACCAGTTCCA29108050GGCTGGTGGGGAGAAAATGGATTAAGGCGCTCCTGGTGGGCTGTATTT
Somateria mollissima genome assembly, chromosome: 16.
OX598705.1:15011381-15011398
GCGGCCACGAGCTGCTCCCGAATCACCACG15011381GGCTGGTGGGGAGAAAATCGGCTCTGGGCAGGGAACCAGCACGGGGCC
Podarcis cretensis genome assembly, chromosome: 5.
OX638153.1:31220842-31220859
AAGCACTGATGCATCAACAAACCAGTTCCA31220842GGCTGGTGGGGAGAAAATGGATTAAGGCGCTCCTGGTGGGCTGTATTT
Labrus mixtus genome assembly, chromosome: 18.
OY757301.1:9915977-9915994
GCTGAATAGTGGAGGTTTTTTTTTAGTGAA9915977GGCTGGTGGGGAGAAAATCAGATTGAGATCTCTGTAGATAAACGCTCC
Cinclus cinclus genome assembly, chromosome: 13.
OY759690.1:2609005-2609022
TTCCAGCCACTCTGTGCTGGGTGTCTGGGG2609005GGCTGGTGGGGAGAAAATGACCCAGAGAGGAGCTCCAGAGGCAAAACC
Chroicocephalus ridibundus genome assembly, chromosome: 18.
OZ001751.1:5410874-5410891
GCCTTGAAGCCATTTGTTTTCCGTTTAATT5410874GGCTGGTGGGGAGAAAATAACGAAGGGAAGTCATGCAGGGGAAGTTCT
Labrus bergylta genome assembly, chromosome: 18.
OZ005726.1:10435158-10435175
CTGAATAGTGTAGGTTTTTTTTTTAGTGAA10435158GGCTGGTGGGGAGAAAATCAGATTGAGATCTCTGTAGATAAACGCTCC
Sequence 12203 from patent US 6812339.
GC696958.1:3602-3619
CAGAGATGTTCTAAAGTCACAACAGAATGA3602GGCTGGTGGGGAGAAAATCAATTTTGAAAAGGTGGTGGAGAGACAGGC
Sequence 1 from patent US 11396665.
OO402379.1:29216427-29216444
TTGAGGTAAGGGACTGGGAGAAAGGGAAAG29216427GGCTGGTGGGGAGAAAATGATGATGATAGATGCTAGGGAAACCGCTAC
metagenome genome assembly, chromosome: 1.
OW818662.1:3587675-3587692
CGCGGTGAATGGCCGAATGACGACTGGAAA3587675GGCTGGTGGGGAGAAAATCCACCTTACCACGTACCAATTTTTGTCCTG
Eukaryotic synthetic construct chromosome 20.
CP034499.1:2218273-2218290
CAGAGATGTTCTAAAGTCACAACAGAATGA2218273GGCTGGTGGGGAGAAAATCAATTTTGAAAAGGTGGTGGAGAGACAGGC
Eukaryotic synthetic construct chromosome 20.
CP034499.1:64455974-64455991
CAGAGATGTTCTAAAGTCACAACAGAATGA64455974GGCTGGTGGGGAGAAAATCAATTTTGAAAAGGTGGTGGAGAGACAGGC
Eukaryotic synthetic construct chromosome 20.
CP034524.1:2218273-2218290
CAGAGATGTTCTAAAGTCACAACAGAATGA2218273GGCTGGTGGGGAGAAAATCAATTTTGAAAAGGTGGTGGAGAGACAGGC
Eukaryotic synthetic construct chromosome 20.
CP034524.1:64455974-64455991
CAGAGATGTTCTAAAGTCACAACAGAATGA64455974GGCTGGTGGGGAGAAAATCAATTTTGAAAAGGTGGTGGAGAGACAGGC
Porphyra yezoensis cDNA clone:PL024c04_r, 5' end.
AV430781.1:196-213
CTCCCTCCACTCACCGCCGCCACCCACCAT196GGCTGGTGGGGAGAAAATGCAGGGCCCGCTGGGTCACCTGGGCGGCGC
Porphyra yezoensis cDNA clone:PM044a05_r, 5' end.
AV434487.1:186-203
CTCCCTCCACTCACCGCCGCCACCCACCAT186GGCTGGTGGGGAGAAAATGCAGGGCCCGCTGGGTCACCTGGGCGGCGC
Microcebus murinus clone CH257-399I7, WORKING DRAFT SEQUENCE, 5 ordered pieces.
AC186106.2:159950-159967
TAAAGTAAAATGTGAGTTCAGGCATGGATG159950GGCTGGTGGGGAGAAAATCTAGTCAAATCTCTTTGAGAGATATATAAC
Aspergillus niger contig An15c0200, genomic contig.
AM270347.1:141302-141319
TTGAGGTAAGGGACTGGGAGAAAGGGAAAG141302GGCTGGTGGGGAGAAAATGATGATGATAGATGCTAGGGAAACCGCTAC
Parageobacillus thermoglucosidasius BH4-1 DMA, complete genome.
AP025621.1:1669823-1669840
ATTTCTGTTGCGCTATATTTTAAGAAAAAA1669823GGCTGGTGGGGAGAAAATGATACGAAAGAAAAGTGATGCCATGAAAAG
Parageobacillus thermoglucosidasius C56-YS93 chromosome, complete genome.
CP002835.1:1684956-1684973
ATTTCTGTTGCGCTATATTTTAAGAAAAAA1684956GGCTGGTGGGGAGAAAATGATACGAAAGAAAAGTGATGCCATGAAAAG
Candidatus Caedibacter acanthamoebae, complete genome.
CP008936.1:216572-216589
GGTGATACAGTCACTTATAAGCGTGTTAAA216572GGCTGGTGGGGAGAAAATCTTCCAATCAATGTGGGACGTTATAATTTT
Niabella ginsenosidivorans strain BS26 chromosome, complete genome.
CP015772.1:877846-877863
CGTGGAACCTGGCCGGATGATAATTGGAAG877846GGCTGGTGGGGAGAAAATCCACCCTATCATGTCCCTGTGTTTGTATTA
Anopheles coluzzii genome assembly, chromosome: 3.
OX030892.1:11751467-11751484
TTTTTGGATGTTTGTGAATTTTTGATAAAT11751467GGCTGGTGGGGAGAAAATTTACATTTTTGGCGGGGGCCACCCACACTC
Cheilosia urbana genome assembly, chromosome: 2.
OX297854.1:101506028-101506045
CGCCGACGACCGAATCGTTTGACCGAAGTG101506028GGCTGGTGGGGAGAAAATATTTCCTCCAAATTTGTACATGGGTCGGGG
Cheilosia vernalis genome assembly, chromosome: 5.
OX421362.1:46595262-46595279
CGCCGACGACCGAATCGTTTGACCGAAGTG46595262GGCTGGTGGGGAGAAAATATTTCCTCCAAATTTATACATGGGTCGGGG
Cantharis flavilabris genome assembly, chromosome: 1.
OX424435.1:48643575-48643592
CAACTGGGTCATAAACTCAAAAAATGCACT48643575GGCTGGTGGGGAGAAAATCAGAACTTACAATTGAAAATAAGCTGCTGC
Schizotus pectinicornis genome assembly, chromosome: 1.
OX638202.1:24912608-24912625
CACTGGACGCCGACTTCTTTATCTTCGGGT24912608GGCTGGTGGGGAGAAAATCATTTGTCAACTGTCCCAGTTTGAAGCTTA
Cantharis nigra genome assembly, chromosome: 4.
OY294031.1:29987465-29987482
CAACTGGTCATAAACTCCGAAAAATGTACT29987465GGCTGGTGGGGAGAAAATAGAACTTACAATTGAAAATAATCTGCTGTT
Cantharis nigra genome assembly, chromosome: X.
OY294034.1:14606501-14606518
TCATGGGTCATAAACTCCGAAAAATGTAGT14606501GGCTGGTGGGGAGAAAATCAGAACTTACAATTGAAAATAAGCTGCTGC
Ceriagrion tenellum genome assembly, chromosome: 7.
OY720639.1:64232893-64232910
AACCGAAGCAAAAAAGCAGATACAAGTACA64232893GGCTGGTGGGGAGAAAATCATTAAACCGAAGTCCTAAAAGAAGTTTGA
Ennomos erosarius genome assembly, chromosome: 1.
OY756978.1:14846166-14846183
TATATACCTACTTCCCCACTGATGGGACAG14846166GGCTGGTGGGGAGAAAATCCAAAAACGGTTTTTATTGTGAGACACATT
Culex pipiens genome assembly, chromosome: 1.
OZ004311.1:13135152-13135169
ATGTATGCAACCCTTGCAGCTGCTGCTGCT13135152GGCTGGTGGGGAGAAAATCCATTAAAATTCCTTTCTTGAGTCCGAGAG
Human DNA sequence from clone RP4-816K17 on chromosome 20p12.2-13.
AL031678.2:107064-107081
GCCTGTCTCTCCACCACCTTTTCAAAATTG107064ATTTTCTCCCCACCAGCCTCATTCTGTTGTGACTTTAGAACATCTCTG
Onychomys torridus genome assembly, chromosome: 3.
LR877190.1:137792830-137792847
TTCATCCATTTTCTCATTCATAAAAGAAGC137792830ATTTTCTCCCCACCAGCCACTATGCTAGAGACCCTTTTGTGTTCACAC
Onychomys torridus genome assembly, chromosome: 3.
LR877190.1:137842697-137842714
TTCATCCATTTTCTCATTCATAAAAGAAGC137842697ATTTTCTCCCCACCAGCCACTATGCTAGAGACCCTTTTGTGTTCACAC
Heterocephalus glaber genome assembly, chromosome: 9.
OX090917.1:5571964-5571981
TCTCTGATCGAACATGTGGAGACGCTCAGG5571964ATTTTCTCCCCACCAGCCATCAGTGCGGGGGAGCAAATGGAAGGTCTT
Onychomys arenicola genome assembly, chromosome: 3.
OX460349.1:143218743-143218760
ATCATTCATTTTCTCATTCATAAAAGAAGC143218743ATTTTCTCCCCACCAGCCACTATGCTAGAGACCCTTTTGTGTTCACAC
Onychomys arenicola genome assembly, chromosome: 3.
OX460349.1:143263265-143263282
TTCATCCATTTTCTCATTCATAAAAGAAGC143263265ATTTTCTCCCCACCAGCCACTATGCTAGAGACCCTTTTGTGTTCACAC
Onychomys leucogaster genome assembly, chromosome: 3.
OX460373.1:142860914-142860931
ATCATTCATTTTCTCATTCATAAAGGAAGC142860914ATTTTCTCCCCACCAGCCACTATGCTAGAGACCCTTTTGTGTTCACAC
Felis catus Senzu DNA, chromosome: B2, American Shorthair breed.
AP023156.1:96284621-96284638
CACATTTATCATGCGTTTCTCACAACCCCA96284621ATTTTCTCCCCACCAGCCCCTCTTTAAGTGTCCAAGGATTAATGAATT
Canis lupus familiaris breed Labrador retriever chromosome 20a.
CP050571.1:22600969-22600986
CAGTCTGTGAACTGCTAACCCTTCCTCCCC22600969ATTTTCTCCCCACCAGCCATGTGATGGACACTCTGGAAACCTCATTTG
Canis lupus familiaris breed Labrador retriever chromosome 20b.
CP050631.1:22592615-22592632
CAGTCTGTGAACTGCTAACCCTTCCTCCCC22592615ATTTTCTCCCCACCAGCCATGTGATGGACACTCTGGAAACCTCATTTG
Sylvilagus floridanus genome assembly, chromosome: 15.
OX463237.1:49202875-49202892
ACAAAGCTGTAGGACCCAGACAAGCCATCA49202875ATTTTCTCCCCACCAGCCAGAGGGTTGGCCACTGTCACCCATGCTGCT
Eptesicus nilssonii genome assembly, chromosome: 19.
OX621298.1:42088085-42088102
TTACCTATTCAACCACCAAAATCTCTCCAG42088085ATTTTCTCCCCACCAGCCCCTCTTCTGTTTACCATGACTGTGTCCCCT
Plecotus auritus genome assembly, chromosome: 7.
OY734028.1:47071403-47071420
CTACCTATTCAACCACCAAAATCTCTCCAA47071403ATTTTCTCCCCACCAGCCCCTCTTCTGTTACCATGACTGTTTCCCCTT
Gouania willdenowi genome assembly, chromosome: 1.
LR131998.1:22858040-22858057
TCACCCTGTCCGCCCCATCCCCCCCCTTCC22858040ATTTTCTCCCCACCAGCCACCACATCCCACCCAGCACTCTCTCTCCCT
Notothenia rossii genome assembly, chromosome: 7.
OX449117.1:62671030-62671047
ATACTTAGCAAGATCCTTTTAATAGCAAAC62671030ATTTTCTCCCCACCAGCCCAAAGAATTATGCAATCAAACAAACAGTGT
Somateria mollissima genome assembly, chromosome: 15.
OX598317.1:784794-784811
GGCCCCGTGCTGGTTCCCTGCCCAGAGCCG784794ATTTTCTCCCCACCAGCCCGTGGTGATTCGGGAGCAGCTCGTGGCCGC
Somateria mollissima genome assembly, chromosome: 22.
OX598711.1:3016708-3016725
AGAACTTCCCCTGCATGACTTCCCTTCGTT3016708ATTTTCTCCCCACCAGCCAATTAAAGGGAAAACAAATGGCTGCTAGGC
Zootoca vivipara genome assembly, chromosome: 5.
OY735906.1:70581077-70581094
ATATTCAGCCCACCAGGAGCGCCTTAATCC70581077ATTTTCTCCCCACCAGCCTGGAACTGGTTTGTTGATGCATCAGTGCTT
Larus fuscus genome assembly, chromosome: 17.
OZ010770.1:3877415-3877432
AGAACTTCCCCTGCATGACTTCCCTTCGTT3877415ATTTTCTCCCCACCAGCCAATTAAACGGAAAACAAATGGCTTCAAGGC
JP 2021035360-A/1562181: SARNA COMPOSITIONS AND METHODS OF USE.
OJ236557.1:324-341
GCCTGTCTCTCCACCACCTTTTCAAAATTG324ATTTTCTCCCCACCAGCCTCATTCTGTTGTGACTTTAGAACATCTCTG
Sclerotinia sclerotiorum chromosome 2, complete sequence.
CP017815.1:2396675-2396692
GCATGACCTGATGGGCTGTGCAACAATGTC2396675ATTTTCTCCCCACCAGCCACATAGCGGGGATTTGATTTTCTCTCTTTC
Parageobacillus thermoglucosidasius strain DSM 2542 chromosome, complete genome.
CP012712.1:2849964-2849981
CTTTTCATGGCATCACTTTTCTTTCGTATC2849964ATTTTCTCCCCACCAGCCTTTTTTCTTAAAATATAGCGCAACAGAAAT
Parageobacillus thermoglucosidasius strain NCIMB 11955 chromosome, complete sequence.
CP016622.1:2849963-2849980
CTTTTCATGGCATCACTTTTCTTTCGTATC2849963ATTTTCTCCCCACCAGCCTTTTTTCTTAAAATATAGCGCAACAGAAAT
Parageobacillus thermoglucosidasius strain TM242 chromosome, complete sequence.
CP016916.1:2849374-2849391
CTTTTCATGGCATCACTTTTCTTTCGTATC2849374ATTTTCTCCCCACCAGCCTTTTTTCTTAAAATATAGCGCAACAGAAAT
Parageobacillus thermoglucosidasius strain 23.6 chromosome, complete genome.
CP063414.1:2242381-2242398
CTTTTCATGGCATCACTTTTCTTTCGTATC2242381ATTTTCTCCCCACCAGCCTTTTTTCTTAAAATATAGCGCAACAGAAAT
1_Tdi_b3v08.
OA567454.1:46463-46480
TCATGAGTGCATCCAGCCACGATTCGAACC46463ATTTTCTCCCCACCAGCCACAAATTAGAAAGTATGAAGTAGATGTCTT
Lycia hirtaria genome assembly, chromosome: 9.
OX387383.1:826563-826580
CACTGACGTCCCGCTTGGGGTGTATTGTGC826563ATTTTCTCCCCACCAGCCTTCTTAAAACATCTGAGCTCCTCAATTAAT
Eilema caniola genome assembly, chromosome: 24.
OX421485.1:886677-886694
GAGACAGTATTGCACTAATAATAAATAGCC886677ATTTTCTCCCCACCAGCCCGCCCCGGAGTTGTGGGTGGAAACAAAGTC
Cydalima perspectalis genome assembly, chromosome: 12.
OX596211.1:4869557-4869574
CTAGCACTAGTTTTATTACTTCGTTTCACA4869557ATTTTCTCCCCACCAGCCGCTGTCAGTCTGGCCAGTTTTCGGTTTTAT
Octopus vulgaris genome assembly, chromosome: 14.
OX597827.1:21410300-21410317
AGAGATTAAGAATCAACTGGTGGAACCCGT21410300ATTTTCTCCCCACCAGCCGTGCAATTTCAACAGTCACTTGCAAGTACC
Anomoia purmunda genome assembly, chromosome: 1.
OX639993.1:132385660-132385677
ATAAAACATAGCTAAAAAAAAAAATGGTTA132385660ATTTTCTCCCCACCAGCCTCTTCGTATTAGTTCGCTAAGATTAATTAA
Cheilosia scutellata genome assembly, chromosome: 3.
OY015313.1:43783328-43783345
GTACAGACCTTAATCCTTCTCCAAGCAATT43783328ATTTTCTCCCCACCAGCCACCGCACTGAGCCGCTTCACTCCCCACACA
Cantharis lateralis genome assembly, chromosome: 4.
OY720627.1:8369105-8369122
GCAGCAGCTTATTTTCAGTTGTAAGTTCTG8369105ATTTTCTCCCCACCAGCCAGTACATTTTTTGGAGTTTATGACCCAATT
Aporrectodea icterica genome assembly, chromosome: 11.
OY744612.1:12505155-12505172
CCCTAACCTCTGACCAGCCCTGTACCAGTG12505155ATTTTCTCCCCACCAGCCGTGTCTCTGTTCTTAAATGGAAAGAAGAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGCTGGTGGGGAGAAAAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCTGGTGGGGAGAAAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.330 | 0.321 | search_plus_done; http://172.18.8.135:50400/match?q=GGCTGGTGGGGAGAAAAT&k=0&no_gap=0&offset=0&limit=50
0.564 | 0.234 | search_minus_done; http://172.18.8.135:50400/match?q=ATTTTCTCCCCACCAGCC&k=0&no_gap=0&offset=0&limit=6
0.586 | 0.022 | cgi_end;

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