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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:05:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

freshwater sediment metagenome genome assembly, chromosome: 1.
OY288114.1:3893820-3893839
ATATCGTAATCTTGCCGAGTTACCGGGAAG3893820GGCTTCCCAAAACCCTAATCGAGGCGGCGGCCTGTGCGCGGCCATTGATA
37RDBRH_UP_052_A07_05DEC2005_063 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE526179.1:44-63
GTTCAAGTTCTGAAATAAAAAGCTTGTGGC44GGCTTCCCAAAACCCTAATCTTTCCACTTCCTCTCTCTCTCTCTCTCTCT
TnSz03201D09.g ORESTES cDNA library, Eimeria tenella sporozoites Eimeria tenella cDNA, mRNA sequence.
JK263173.1:213-232
CAGCAATTGTCGAGGGCCGCAGCGACACTA213GGCTTCCCAAAACCCTAATCCGCTCGCCGTACAGCCTGTCTGCTAGGGCT
Saccharum hybrid cultivar SP80-3280 hypothetical protein (Sh035E13_g0170) and hypothetical protein (Sh035E13_g0190) genes, complete cds; and Sh035E13_g0220, Sh035E13_g0230, and Sh035E13_g0240 pseudoge
MH463467.1:44058-44077
CGGGTGAACAAAACCTGCCAGGGTGTGACC44058GGCTTCCCAAAACCCTAATCTTCTTTCTCACTTCGTTTCTTCCTCTCGGC
Saccharum hybrid cultivar SP80-3280 hypothetical protein (Sh218H04_g0010) and hypothetical protein (Sh218H04_g0030) genes, complete cds; and Sh218H04_g0060, Sh218H04_g0090, and Sh218H04_g0120 pseudoge
MH463477.1:21170-21189
CGGGTGAACAAAACCTGCCAGGGTGTGACC21170GGCTTCCCAAAACCCTAATCTTCTTTCTCACTTCGTTTCTTCCTCTCGGC
Saccharum hybrid cultivar SP80-3280 hypothetical protein (Sh284G01_g0080) and hypothetical protein (Sh284G01_g0090) genes, complete cds; and Sh284G01_g0110, Sh284G01_g0120, and Sh284G01_g0130 pseudoge
MH463484.1:11469-11488
CGGGTGAACAAAACCTGCCAGGGTGTGACC11469GGCTTCCCAAAACCCTAATCTTCTTTCTCACTTCGTTTCTTCCTCTCGGC
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 3.
CP124717.1:32523965-32523984
CAAATTAAGTGAATGACAAGGAACATAATG32523965GGCTTCCCAAAACCCTAATCTGCCCAAGGCCCAATATTGTTAAGCCCACA
Brassica rapa genome, scaffold: A03.
LR031572.1:28409508-28409527
GTTCAAGTTCTGAAATAAAAAGCTTGTGGC28409508GGCTTCCCAAAACCCTAATCTTTCCACTTCCTCTCTCTCTCTCTCTCTCT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:28538450-28538469
GTTCAAGTTCTGAAATAAAAAGCTTGTGGC28538450GGCTTCCCAAAACCCTAATCTTTCCACTTCCTCTCTCTCTCTCTCTCTCT
Alisma plantago-aquatica genome assembly, chromosome: 2.
OY856410.1:229149324-229149343
TAGGGTCAAATTAGGGTTATGTTAGGGTTA229149324GGCTTCCCAAAACCCTAATCAACACATATTAAGGCTTTTCAAGTTTAGAA
Sarcophilus harrisii genome assembly, chromosome: 5.
LR735558.1:64018771-64018790
CAAGGTTTTTAAAGGAGAGTCACATGACCA64018771GATTAGGGTTTTGGGAAGCCTATATTTCACCTGATCCTATCCCTACCTCC
EtESTea42d11.y1 Eimeria S5-2 Sporozoite stage Eimeria tenella cDNA 5', mRNA sequence.
AI756317.1:156-175
AGCCCTAGCAGACAGGCTGTACGGCGAGCG156GATTAGGGTTTTGGGAAGCCTAGTGTCGCTGCGGCCCTCGACAATTGCTG
EtESTed88h01.y1 Eimeria tenella S5-2 cDNA Neg Selected Eimeria tenella cDNA 5', mRNA sequence.
BG724595.1:169-188
AGCCCTAGCAGACAGGCTGTACGGCGAGCG169GATTAGGGTTTTGGGAAGCCTAGTGTCGCTGCGGCCCTCGACAATTGCTG
EtESTea20a11.y1 Eimeria M5-6 Merozoite stage Eimeria tenella cDNA 5', mRNA sequence.
BI895201.1:407-426
AGCCCTAGCAGACAGGCTGTACGGCGAGCG407GATTAGGGTTTTGGGAAGCCTAGTGTCGCTGCG
TSA: Lygodium japonicum RNA, contig: isotig17586_gene=isogroup05560.
FX962653.1:1051-1070
AAGCTTTCATGGCTGCCATGGACTGCCTAT1051GATTAGGGTTTTGGGAAGCCAAGAATGGCCAAGAAGGTGGAGAAAGAAGC
TSA: Lygodium japonicum RNA, contig: isotig17587_gene=isogroup05560.
FX962654.1:946-965
AAGCTTTCATGGCTGCCATGGACTGCCTAT946GATTAGGGTTTTGGGAAGCCAAGAATGGCCAAGAAGGTGGAGAAAGAAGC
TSA: Hevea brasiliensis Unigene15358_HB.Hebrbark mRNA sequence.
JR359538.1:228-247
GGATCACTTCTGGATACAGGGATTTTTTTG228GATTAGGGTTTTGGGAAGCCATTGTTTATTTTTGAAGGGAAAGGTGGGGA
Saccharum hybrid cultivar R570 clone BAC 258F08 complete sequence.
KF184970.1:71106-71125
GCCGAGAGGAAGAAACGAAGTGAGAAAGAA71106GATTAGGGTTTTGGGAAGCCGGTCACACCCTGGCAGGTTTTGTTCACCCG
Parietaria judaica genome assembly, chromosome: 9.
OX940868.1:10114196-10114215
GCCAATGTCGAAACCTTAAGCCGTCAAGAG10114196GATTAGGGTTTTGGGAAGCCAATTGGCTTCTGGATGGAATCGTGAATGCG
Eimeria tenella isolate APU2 chromosome 13.
CP118654.1:4069663-4069682
TTTGTGTGCGGGCAGGCTGTACGGCGAGCG4069663GATTAGGGTTTTGGGAAGCCTAGTGTCGCTGCGGCCCTCGACAATTGCTG
Eimeria tenella genome assembly, chromosome: 13.
HG994973.1:4274376-4274395
TTTGTGTGCGGGCAGGCTGTACGGCGAGCG4274376GATTAGGGTTTTGGGAAGCCTAGTGTCGCTGCGGCCCTCGACAATTGCTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGCTTCCCAAAACCCTAATC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCTTCCCAAAACCCTAATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.281 | 0.272 | search_plus_done; http://172.18.8.135:50400/match?q=GGCTTCCCAAAACCCTAATC&k=0&no_gap=0&offset=0&limit=50
0.365 | 0.084 | search_minus_done; http://172.18.8.135:50400/match?q=GATTAGGGTTTTGGGAAGCC&k=0&no_gap=0&offset=0&limit=40
0.372 | 0.007 | cgi_end;

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