GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:25:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BFL26_002843 Amphioxus 26hr cDNA library (Name convention: BFL26 or MPMGp531) Branchiostoma floridae cDNA clone MPMGp531E1299 5', mRNA sequence.
BI388140.1:1-19
1GGCTTGCGATACACCATCACGACCAGACGTCCGCGTGGCACAAATTCCA
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:66445812-66445830
ACATGCTTTAAGGTTAAGTGTTGACTGTGG66445812GGCTTGCGATACACCATCATAAGGAGCCAAACACTAAATACATACTATA
Brassica napus genome assembly, chromosome: A09.
HG994363.1:50342874-50342892
ACATGCTTTAAGGTTAAGTGTTGACTGTGG50342874GGCTTGCGATACACCATCATAAGGAGCCAAACACTAAATACATACTATA
Brassica napus genome assembly, chromosome: C08.
HG994372.1:37666363-37666381
AAGGTTAAGTGTTGATGCGTCATGCTGTGG37666363GGCTTGCGATACACCATCATAAGGAGCCAAACACTATATACATACTATA
Brassica rapa genome, scaffold: A09.
LR031568.1:54522372-54522390
AAGGTTAAGTGTTGATGCGTCATGCTGTGG54522372GGCTTGCGATACACCATCATAAGGAGCCAAACACTGTATACATACTATA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:47102393-47102411
AAGGTTAAGTGTTGATGCGTCATGCTGTGG47102393GGCTTGCGATACACCATCATAAGGAGCCAAACACTATATACATACTATA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:65045950-65045968
AAGGTTAAGTGTTGATGCGTCATGCTGTGG65045950GGCTTGCGATACACCATCATAAGGAGCCAAACACTGTATACATACTATA
Berberis vulgaris genome assembly, chromosome: 7.
OY747130.1:14899910-14899928
CTCCTCATCACGTGCGCGAGAGCATGGCCT14899910GGCTTGCGATACACCATCATCTGATACATCATCATGCATAGATATCATA
Moritella marina ATCC 15381 strain MP-1 chromosome, complete genome.
CP044399.1:2352891-2352909
AATGAAAGACTGTCCTGAATCAAAACGGTT2352891GGCTTGCGATACACCATCAACCACAATTTTAACGCGATTGCCTTCCATT
BOT01-32H19TF BOT01 Brassica oleracea genomic clone BOT01-32H19, genomic survey sequence.
FI700064.1:552-570
TATAGTATGTATATAGTGTTTGGCTCCTTA552TGATGGTGTATCGCAAGCCCCACAGCATGACGCATCAACACTTAACCTT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:4006123-4006141
TATAGTATGTATATAGTGTTTGGCTCCTTA4006123TGATGGTGTATCGCAAGCCCCACAGCATGACGCATCAACACTTAACCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGCTTGCGATACACCATCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCTTGCGATACACCATCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.146 | 0.137 | search_plus_done; http://172.18.8.135:50400/match?q=GGCTTGCGATACACCATCA&k=0&no_gap=0&offset=0&limit=50
0.211 | 0.065 | search_minus_done; http://172.18.8.135:50400/match?q=TGATGGTGTATCGCAAGCC&k=0&no_gap=0&offset=0&limit=41
0.213 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).