GGGenome | Results

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2025-04-05 21:29:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Gossypium hirsutum cultivar TM1 chromosome A11.
CP023743.1:60846355-60846374

TTCTATTGGGAAAGTTATAGATGCAATGTT60846355GGGAACAACTTCCACATTGAGGAAGTTGTGGAGGTCACATTGAGGAAGTT

Gossypium herbaceum isolate GPA1alz chromosome 11.
CP106704.1:125293793-125293812

TTCTATTGGGAAAGTTATAGATGCAATGTT125293793GGGAACAACTTCCACATTGAGGAAGTTGTGGAGGTCACATTGAGGAAGTT

Gossypium hirsutum clone BAC Chr11_9_UCR49 sequence, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
MW008617.1:40064-40083

AACTTCCTCAATGTGACCTCCACAACTTCC40064TCAATGTGGAAGTTGTTCCCAACATTGCATCTATAACTTTCCCAATAGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.112 | 0.104 | search_plus_done; http://172.18.8.135:50400/match?q=GGGAACAACTTCCACATTGA&k=0&no_gap=0&offset=0&limit=50
0.140 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=TCAATGTGGAAGTTGTTCCC&k=0&no_gap=0&offset=0&limit=48
0.140 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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