GGGenome | Results

2025-04-09 19:56:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

CGN-24297 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w32f7 5', mRNA sequence.
DV683712.1:171-198

TGGGAACTTCAAAGGGAGTGTTGGAGATAG171CTAAGTTTGCAGTATATGTGAGTGTCCCGATTGGGCTGATGTACTTCTATGCCAACAA

CGN-26296 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w31f7 5', mRNA sequence.
DV685092.1:171-198

TGGGAACTTCAAAGGGAGTGTTGGAGATAG171CTAAGTTTGCAGTATATGTGAGTGTCCCGATTGGGCTGATGTACTTCTATGCCAACAA

TransId-83953 CACAT36FR28 Coffea arabica cDNA clone CACAT36FR28_Q3_03_J05_074.F similar to Symbol: None | expressed protein | chr4:8383765-8385074 FORWARD | Aliases: None, mRNA sequence.
GR984927.1:209-236

TGGGAACTTCAAAGGGAGTGTTGGAGATAG209CTAAGTTTGCAGTATATGTGAGTGTCCCGATTGGGCTGATGTACTTCTATGCCAACAA

TransId-94526 CACAT36MER Coffea arabica cDNA clone CACAT36MER_Q2_01_G16_247.F similar to Symbol: None | expressed protein | chr4:8383765-8385074 FORWARD | Aliases: None, mRNA sequence.
GR988852.1:215-242

TGGGAACTTCAAAGGGAGTGTTGGAGATAG215CTAAGTTTGCAGTATATGTGAGTGTCCCGATTGGGCTGATGTACTTCTATGCCAACAA

TransId-101833 CACAT45FR Coffea arabica cDNA clone CACAT45FR_M001_D13_196.F similar to Symbol: None | expressed protein | chr4:8383765-8385074 FORWARD | Aliases: None, mRNA sequence.
GR990838.1:215-242

TGGGAACTTCAAAGGGAGTGTTGGAGATAG215CTAAGTTTGCAGTATATGTGAGTGTCCCGATTGGGCTGATGTACTTCTATGCCAACAA

TransId-218151 CACATN1 Coffea arabica cDNA clone CACATN1-5N86TV similar to Hypothetical protein - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GR998043.1:222-249

TGGGAACTTCAAAGGGAGTGTTGGAGATAG222CTAAGTTTGCAGTATATGTGAGTGTCCCGATTGGGCTGATGTACTTCTATGCCAACAA

TransId-256798 CAET87R Coffea arabica cDNA clone CAET87R-CAEU777TV similar to Hypothetical protein - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GT015136.1:161-188

TGGGAACTTCAAAGGGAGTGTTGGAGATAG161CTAAGTTTGCAGTATATGTGAGTGTCCCGATTGGGCTGATGTACTTCTATGCCAACAA

CA00-XX-CL2-001-G06-EZ.F Coffea arabica CL2 Coffea arabica cDNA clone CA00-XX-CL2-001-G06-EZ, mRNA sequence.
GT682464.1:180-207

TGGGAACTTCAAAGGGAGTGTTGGAGATAG180CTAAGTTTGCAGTATATGTGAGTGTCCCGATTGGGCTGATGTACTTCTATGCCAACAA

Coffea arabica clone BAC 136-1N, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.
GU123899.1:59134-59161

TGGGAACTTCAAAGGGAGTGTTGGAGATAG59134CTAAGTTTGCAGTATATGTGAGTGTCCCGATTGGGCTGATGTACTTCTATGCCAACAA

Coffea canephora isolate HD-200-94 clone BAC CC-62-4K, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
HQ696507.1:136234-136261

TGGGAACTTCAAAGGGAGTGTTGGAGATAG136234CTAAGTTTGCAGTATATGTGAGTGTCCCGATTGGGCTGATGTACTTCTATGCCAACAA

Coffea arabica cultivar iapar59 clone BAC 121-12L, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces.
HQ696510.1:59502-59529

TGGGAACTTCAAAGGGAGTGTTGGAGATAG59502CTAAGTTTGCAGTATATGTGAGTGTCCCGATTGGGCTGATGTACTTCTATGCCAACAA

CCES21 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110674.1:171-198

TGGGAACTTCAAAGGGAGTGTTGGAGATAG171CTAAGTTTGCAGTATATGTGAGTGTCCCGATTGGGCTGATGTACTTCTATGCCAACAA

Data Export:

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Debug Info:

0.008 | 0.008 | search_start;
0.099 | 0.091 | search_plus_done; http://172.18.8.135:50400/match?q=GGGACACTCACATATACTGCAAACTTAG&k=0&no_gap=0&offset=0&limit=50
0.751 | 0.652 | search_minus_done; http://172.18.8.135:50400/match?q=CTAAGTTTGCAGTATATGTGAGTGTCCC&k=0&no_gap=0&offset=0&limit=50
0.759 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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