GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 18:40:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Somateria mollissima genome assembly, chromosome: 10.
OX598312.1:17089332-17089353
GAGCCAGGGAACCTCTGTTTAGAGAGCTAT17089332GGGAGAAGTATAAGGAGAAATGAAGTGATGGAAAAAGGGAAAGAATTAAAAG
Somateria mollissima genome assembly, chromosome: 10.
OX598699.1:17122118-17122139
GAGCCAGGGAACCTCTGTTTAGAGAGCTAT17122118GGGAGAAGTATAAGGAGAAATGAAGTGATGGAAAAAGGGAAAGAATTAAAAG
Anas acuta genome assembly, chromosome: 12.
OZ009975.1:17029279-17029300
GAGCCAGGGAACCTCTGTTTAGAGAGCTAT17029279GGGAGAAGTATAAGGAGAAATGAAGTGATGGAAAAAGGGAAAGAATGAAAAG
TSA: Cajanus cajan cultivar UPAS 120 contig07713.UPAS mRNA sequence.
EZ625430.1:69-90
ACCACCTGCTGAGGGTTTGAAGGTGGTGGT69GGGAGAAGTATAAGGAGAAATGTCAAAAGGCTGCAAAGGTGTTGCAGGTGCA
VUH2-79K5TV VUUBBa (VUH2) Vigna unguiculata genomic clone VUH2-79K5, genomic survey sequence.
EI928874.1:63-84
TGAGGGTTTGAAGGTAGAAGAGGTGGTGGT63GGGAGAAGTATAAGGAGAAATGTCAAAAGGCTGCAAAGTCCTTACAGGTGCA
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC M020I06, *** SEQUENCING IN PROGRESS ***, 31 unordered pieces.
AC274220.1:59895-59916
TGAGGGTTTGAAGGTAGAAGAGGTGGTGGT59895GGGAGAAGTATAAGGAGAAATGTCAAAAGGCTGCAAAGTCCTTACAGGTGCA
Vigna unguiculata cultivar Xiabao 2 chromosome Vu09.
CP039355.1:37482624-37482645
TGAGGGTTTGAAGGTAGAAGAGGTGGTGGT37482624GGGAGAAGTATAAGGAGAAATGTCAAAAGGCTGCAAAGTCCTTACAGGTGCA
Anas platyrhynchos genome assembly, chromosome: 11.
LS423621.1:4914832-4914853
CTTTTCATTCTTTCCCTTTTTCCATCACTT4914832CATTTCTCCTTATACTTCTCCCATAGCTCTCTAAACAGAGGTTCCCTGGCTC
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC M061G05, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces.
AC272028.1:52230-52251
TGCACCTGTAAGGACTTTGCAGCCTTTTGA52230CATTTCTCCTTATACTTCTCCCACCACCACCTCTTCTACCTTCAAACCCTCA
Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
AP015035.1:16193723-16193744
TGCACCTGTAAGGACTTTGCAGCCTTTTGA16193723CATTTCTCCTTATACTTCTCCCACCACCACCTCTTCTACCTTCAAACTCTCA
Sphenostylis stenocarpa genome assembly, chromosome: 9.
OY731406.1:15474452-15474473
TGCACCTGTAAGAACTTTGCAGCCTTTTGA15474452CATTTCTCCTTATACTTCTCCCACCACCACCTCTTCTACCTTCAACCCCTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGGAGAAGTATAAGGAGAAATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGAGAAGTATAAGGAGAAATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.150 | 0.142 | search_plus_done; http://172.18.8.135:50400/match?q=GGGAGAAGTATAAGGAGAAATG&k=0&no_gap=0&offset=0&limit=50
0.184 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=CATTTCTCCTTATACTTCTCCC&k=0&no_gap=0&offset=0&limit=43
0.187 | 0.003 | cgi_end;

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