GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 03:41:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS13064C03 KS13 Capsicum annuum cDNA, mRNA sequence.
GD056714.1:374-399
CCAAAGTCCTTTTAAGCTCAATCTTGGTGT374GGGAGCTTATAGAGATGATAAAGGGAAACCAGTTATTCTTGAGTGTGTTCGAAGAG
KS24052D08 KS24 Capsicum annuum cDNA, mRNA sequence.
GD122701.1:180-205
CCAAAGTCCTTTTAAGCTCAATCTTGGTGT180GGGAGCTTATAGAGATGATAAAGGGAAACCAGTTATTCTTGAGTGTGTTCGAAGAG
TSA: Capsicum annuum MGMT_Contig33584 mRNA sequence.
JW083828.1:525-550
CCAAAGTCCTTTTAAGCTCAATCTTGGTGT525GGGAGCTTATAGAGATGATAAAGGGAAACCAGTTATTCTTGAGTGTGTTCGAAGAG
Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:153970020-153970045
TATTTTATTATTTTCTAAAACTTTTTCATA153970020GGGAGCTTATAGAGATGATAAAGGGAAACCAGTTATTCTTGAGTGTGTTCGAAGAG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 10.
CP124710.1:105475641-105475666
CTCTTCTAACACACTCAAGAGTAACTGGCT105475641TCCCTTTATCATCTCTATAAGCTCCCTATGAAAAAGTTTTAGAAAAAATAAAATAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:162210498-162210523
CTCTTCGAACACACTCAAGAATAACTGGTT162210498TCCCTTTATCATCTCTATAAGCTCCCTATGAAAAAGTTTTAGAAAATAATAAAATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGGAGCTTATAGAGATGATAAAGGGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGAGCTTATAGAGATGATAAAGGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.244 | 0.235 | search_plus_done; http://172.18.8.135:50400/match?q=GGGAGCTTATAGAGATGATAAAGGGA&k=0&no_gap=0&offset=0&limit=50
0.262 | 0.018 | search_minus_done; http://172.18.8.135:50400/match?q=TCCCTTTATCATCTCTATAAGCTCCC&k=0&no_gap=0&offset=0&limit=46
0.263 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).