GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 19:44:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 16.
OU383789.1:4584127-4584146
ATTAACTCAAAATGCTTTTTTTATGGAGAG4584127GGGAGGGTGGTAAAGGAGTGGTGGAAGTGTTTAATTTGTAGTAAGCAAGG
Psittacula echo genome assembly, chromosome: 16.
OY725436.1:460986-461005
GCCCAGGCTGAATCACAGCCAGAACCCAGG460986GGGAGGGTGGTAAAGGAGTGAGCCCACAGGGCTCTGCTGCCTGCAGCAGG
Cinclus cinclus genome assembly, chromosome: 20.
OY759697.1:5198023-5198042
ATCAACTCAAAATGCTTTTTTTATGGAAAT5198023GGGAGGGTGGTAAAGGAGTGGTGGAAGTGCTTAGTTTGTAGTATGTCAGG
Solanum melongena mRNA, clone: SmFL10P22, 3'end.
FS073498.1:58-77
TCATATGCAGCGCCTATCTAAGGCGTATGG58GGGAGGGTGGTAAAGGAGTGAAAGAATTACAACAATAATACACAAGTTGA
Anisus vortex genome assembly, chromosome: 4.
OX421495.1:52029908-52029927
TGGATGGGTGGTATTAATTAATATGGGGGT52029908GGGAGGGTGGTAAAGGAGTGTCTTCATAAATTGTTCAATCATACACTGAC
Solanum melongena mRNA, clone: SHT04D01, 5'end, expressed in shoot at 7d after germination.
FS064999.1:284-303
TCAACTTGTGTATTATTGTTGTAATTCTTT284CACTCCTTTACCACCCTCCCCCATACGCCTTAGATAGGCGCTGCATATGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGGAGGGTGGTAAAGGAGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGAGGGTGGTAAAGGAGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.363 | 0.354 | search_plus_done; http://172.18.8.135:50400/match?q=GGGAGGGTGGTAAAGGAGTG&k=0&no_gap=0&offset=0&limit=50
0.563 | 0.201 | search_minus_done; http://172.18.8.135:50400/match?q=CACTCCTTTACCACCCTCCC&k=0&no_gap=0&offset=0&limit=45
0.564 | 0.001 | cgi_end;

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