GGGenome | Results

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2025-04-09 03:07:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Allium fistulosum mRNA, contig: AFU_08020.
FX561745.1:1103-1122

CTTTCTTCAGTCCAACCTTTTCACAGCAGG1103GGGATCTGCCCATTTCTTATACTTATTTTCTCTATTTTATTCTTCCAAAT

Allium cepa genome assembly, chromosome: 1.
LR994629.1:155011387-155011406

CTTTCTTCAGTCCAACCTTTTCACAGCAGG155011387GGGATCTGCCCATTTCTTATATTTATTTTATTCTTCCAAATGATGAGAGC

G1147P348RB4.T0 Anolis carolinensis pooled normalized regenerating tail cDNA library Anolis carolinensis cDNA, mRNA sequence.
FG768733.1:369-388

ACCTGAAAGTTAATCCAAAGACTGCTTATC369ATAAGAAATGGGCAGATCCCGGAAGCTCTGAACCCTTATTGGCTCTGGTA

Allium cepa genome assembly, chromosome: 1.
LR994629.1:155015907-155015926

GCTCTCATCATTTGGAAGAATAAAATAAAT155015907ATAAGAAATGGGCAGATCCCCCTGCTGTGAAAAGGTTGGACTGAAGAAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.102 | 0.093 | search_plus_done; http://172.18.8.135:50400/match?q=GGGATCTGCCCATTTCTTAT&k=0&no_gap=0&offset=0&limit=50
0.202 | 0.100 | search_minus_done; http://172.18.8.135:50400/match?q=ATAAGAAATGGGCAGATCCC&k=0&no_gap=0&offset=0&limit=48
0.204 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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