GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:33:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

UCRCS09_42H05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-42H05-P9-1-7.b, mRNA sequence.
CX051926.1:129-148
CGGCACTTTGCATCGAGTGGGAGGAAAATT129GGGATGGACTCCCAGTGTTAACTTCACTGAATGGTCTAGCCATGAATCTT
IC0AAA40AH07RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY276100.1:122-141
CGGCACTTTGCATCGAGTGGGAGGAAAATT122GGGATGGACTCCCAGTGTTAACTTCACTGAATGGTCTAGCCATGAATCTT
IC0AAA40AH07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA40AH07, mRNA sequence.
FC898969.1:122-141
CGGCACTTTGCATCGAGTGGGAGGAAAATT122GGGATGGACTCCCAGTGTTAACTTCACTGAATGGTCTAGCCATGAATCTT
UCRCS09_42H05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-42H05-P9-1-6.g, mRNA sequence.
CX051925.1:586-605
AAGATTCATGGCTAGACCATTCAGTGAAGT586TAACACTGGGAGTCCATCCCAATTTTCCTCCCACTCGATGCAAAGTGCCG
Citrus sinensis genome assembly, chromosome: 9.
OY754326.1:294944-294963
AAGATTCATGGCTAGACCATTCAGTGAAGT294944TAACACTGGGAGTCCATCCCAATTTTCCTCCCACTCGATGCAAAGTGCCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGGATGGACTCCCAGTGTTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGATGGACTCCCAGTGTTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.238 | 0.229 | search_plus_done; http://172.18.8.135:50400/match?q=GGGATGGACTCCCAGTGTTA&k=0&no_gap=0&offset=0&limit=50
0.292 | 0.054 | search_minus_done; http://172.18.8.135:50400/match?q=TAACACTGGGAGTCCATCCC&k=0&no_gap=0&offset=0&limit=47
0.293 | 0.001 | cgi_end;

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