GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 22:00:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Cannabis sativa PK17530.1_1.CasaPuKu mRNA sequence.
JP449789.1:394-413
TGGAAGCTTTTTACACCAGAACAATGTTCT394GGGATTAACAAGTTTGTGGCAAAATTCTCTATCCCTTTATTATCTTTTCA
Humulus lupulus genome assembly, chromosome: 2.
OY720648.1:73235527-73235546
TGGAAGCTCTTCACCCCAGAACAATGTTCT73235527GGGATTAACAAGTTTGTGGCAAAATTCTCTATCCCTTTATTATCTTTTCA
Humulus lupulus genome assembly, chromosome: 5.
OY720652.1:44336763-44336782
TGGAAGCTCTTCACCCCATAACAATGTTAT44336763GGGATTAACAAGTTTGTGGCAAAATTCTCTATTCCTTTATTATCTTTTCA
Tridacna gigas genome assembly, chromosome: 5.
OX244032.2:47536326-47536345
GTAGTTGCTAATAAAAGATTTCTAAGTAAT47536326GGGATTAACAAGTTTGTGGCAGAAAATTTCAAAAACAATAACAGTTAAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp277016_c0_seq1.
LA377657.1:845-864
TGAAAAGATAATAAAGGGATAGAGAATTTT845GCCACAAACTTGTTAATCCCAGAACATTGTTCTGGGGTGAAGAGCTTCCA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp277016_c0_seq2.
LA377658.1:1137-1156
TGAAAAGATAATAAAGGGATAGAGAATTTT1137GCCACAAACTTGTTAATCCCAGAACATTGTTCTGGGGTGAAGAGCTTCCA
Chionographis japonica genome assembly, chromosome: 8.
OX393556.1:75463448-75463467
TGGAAGGATAGCAGAGGGACTGAAAATTTT75463448GCCACAAACTTGTTAATCCCCGAGCACTGATCGGGAGAGAAGAGCTTCCA
Ceriagrion tenellum genome assembly, chromosome: 7.
OY720639.1:83316264-83316283
CCTACCCTTGATCCATAAATCCACCCAGGC83316264GCCACAAACTTGTTAATCCCGGGCACCGCGCAAACCAGAACGGGTAAAGC
Pyrrhosoma nymphula genome assembly, chromosome: 8.
OY754335.1:55944878-55944897
CCTACCCTTGATCCATAAATCCACCCTGCC55944878GCCACAAACTTGTTAATCCCCGGCACCGCGCACTGCAGCGGGAAAACCAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGGATTAACAAGTTTGTGGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGATTAACAAGTTTGTGGC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.152 | 0.141 | search_plus_done; http://172.18.8.135:50400/match?q=GGGATTAACAAGTTTGTGGC&k=0&no_gap=0&offset=0&limit=50
0.229 | 0.077 | search_minus_done; http://172.18.8.135:50400/match?q=GCCACAAACTTGTTAATCCC&k=0&no_gap=0&offset=0&limit=46
0.233 | 0.004 | cgi_end;

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