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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 02:20:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GH_RMIRS_017_B07_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA sequence.
DW478977.1:623-642
ACAAGGCCGCAGGCACGTGCTGCCACTCCA623GGGCAACCATGAGAAATAGCAATGATTCCTATGGAATCCGGACCAGGTT
TSA: Cajanus cajan cultivar UPAS 120 contig15942.UPAS mRNA sequence.
EZ633659.1:154-173
ACAAGGCCGCAGGCACGTGCAGCCACTCCA154GGGCAACCATGAGAAATAGCAACGATTCCTATGGAATCCGGACCAGGCTT
TSA: Siraitia grosvenorii SIG_025429 mRNA sequence.
JL549607.1:507-526
ACCAGGCCGCAGGCACGTGCAGCCACCCCA507GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCG
TSA: Arachis hypogaea Ahy.Unigene217 mRNA sequence.
JR540933.1:1938-1957
ACAAGGCCGCATGCACGTGCTGCCACTCCA1938GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCGGACCAGGCTT
TSA: Hevea brasiliensis contig70599, mRNA sequence.
JT925009.1:2025-2044
ACAAGGCCGCATGCACGTGCTGCCACACCA2025GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCC
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-14.
CP023126.1:20057024-20057043
ACAAGGCCACAGGCTCGTGCTGCGACTCCA20057024GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCGGACCAGGCTG
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-15.
CP023127.1:21875886-21875905
ACAAGACCGCAAGCACGTGCTGCCACTCCA21875886GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCGGACCAGGCTG
Arachis hypogaea cultivar Shitouqi chromosome A10.
CP030992.1:96271294-96271313
ACAAGGCCGCATGCACGTGCTGCCACTCCA96271294GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCGGACCAGGCTG
Arachis hypogaea cultivar Shitouqi chromosome B10.
CP031002.1:123009970-123009989
ACAAGGCCGCATGCACGTGCTGCCACTCCA123009970GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCGGACCAGGCTG
Gossypium turneri isolate D10-2 chromosome D10_05.
CP032575.1:50071495-50071514
ACAAGGCCGCAGGCACGTGCTGCCACTCCA50071495GGGCAACCATGAGAAATAGCAATGATTCCTATGGAATCCGGACCAGGCTG
Arachis ipaensis cultivar K30076 chromosome 10.
CP049901.1:123954332-123954351
ACAAGGCCGCATGCACGTGCTGCCACTCCA123954332GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCGGACCAGGCTG
Carpinus viminea chromosome 4.
CP054670.1:8851653-8851672
ACAAGGCCGCATGCTCGTGCTGCCACTCCA8851653GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCGGACCAGGCTG
Gossypium herbaceum isolate Zhongcao1 chromosome 5.
CP106692.1:83506984-83507003
ACAAGGCCGCAGGCACGTGCTGCCACTCCA83506984GGGCAACCATGAGAAATAGCAATGATTCCTATGGAATCCGGACCAGGCTG
Gossypium rotundifolium isolate GPK201 chromosome 13.
CP106734.1:184516083-184516102
ACAAGTCCGCAGGCACGTGCTGCCACTCCA184516083GGGCAACCATGAGAAATAGCAATGATTCCTATGGAATCCGGACCAGGCTG
Warburgia ugandensis isolate CL-2023a chromosome 7.
CP141132.1:62388137-62388156
ACTAGGCCACAAGCTCGTGCTGCCACTCCA62388137GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCGGACCAGGCTG
Cucumis melo genomic scaffold, anchoredscaffold00067.
LN681805.1:1623543-1623562
ACCAGGCCGCAGGCACGTGCAGCCACACCA1623543GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCGGACCAGGCTA
Cucumis melo genomic chromosome, chr_1.
LN713255.1:35263711-35263730
ACCAGGCCGCAGGCACGTGCAGCCACACCA35263711GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCGGACCAGGCTA
Mercurialis annua genome assembly, chromosome: LG1-X.
OW569319.1:60414732-60414751
ACAAGGCCGCATGCACGTGCTGCCACACCA60414732GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCGGACCAGGCTG
Misopates orontium genome assembly, chromosome: 3.
OX326948.1:38593522-38593541
ACGAGGCCACAAGCTCTTGCTGCCACACCA38593522GGGCAACCATGAGAAATAGCTATGATTCCAATGGAATCCGGACCAGGCTA
Chamaenerion angustifolium genome assembly, chromosome: 5.
OX328269.1:3775252-3775271
ACCAACCCGCAGGCTCGGGCTGCAACTCCA3775252GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCGGACCAGGCTG
Euphrasia confusa genome assembly, chromosome: 20.
OX940968.1:5909177-5909196
ACAAGGCCGCAAGCTCTTGCTGCAACTCCA5909177GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCGGACCAGGCTA
Euphrasia confusa genome assembly, chromosome: 22.
OX940970.1:5644343-5644362
ACAAGGCCGCAAGCTCTTGCTGCAACTCCA5644343GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCGGACCAGGCTA
Hibiscus tridactylites genome assembly, chromosome: 11.
OY288275.1:90194248-90194267
ACAAGGCCACAGGCACGTGCTGCCACTCCA90194248GGGCAACCATGAGAAATAGCAACGATTCCTATGGAATCCGGACCAGGCTG
Hibiscus tridactylites genome assembly, chromosome: 14.
OY288278.1:6849076-6849095
ACAAGGCCGCAAGCACGTGCTGCCACTCCA6849076GGGCAACCATGAGAAATAGCAACGATTCCTATGGAATCCGGACCAGGCTG
Hibiscus tridactylites genome assembly, chromosome: 15.
OY288279.1:87364988-87365007
ACAAGGCCGCAAGCACGTGCTGCCACTCCA87364988GGGCAACCATGAGAAATAGCAACGATTCCTATGGAATCCGGACCAGGCTG
Hibiscus tridactylites genome assembly, chromosome: 16.
OY288280.1:85912194-85912213
ACAAGGCCGCAGGCACGTGCTGCCACTCCA85912194GGGCAACCATGAGAAATAGCAACGATTCCTATGGAATCCGGACCAGGCTG
Hibiscus tridactylites genome assembly, chromosome: 18.
OY288282.1:82120203-82120222
ACAAGGCCGCAGGCACGTGCTGCCACTCCA82120203GGGCAACCATGAGAAATAGCAACGATTCCTATGGAATCCGGACCAGGCTG
Inga oerstediana genome assembly, chromosome: 4.
OY723402.1:5655084-5655103
ACAAGGCCGCATGCGCGGGCTGCCACTCCA5655084GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCGGACCAGGCTG
Inga leiocalycina genome assembly, chromosome: 6.
OY725325.1:5519788-5519807
ACAAGGCCGCATGCGCGGGCTGCCACTCCA5519788GGGCAACCATGAGAAATAGCAACGATTCCAATGGAATCCGGACCAGGCTG
Sequence 405 from patent US 9040774.
HK726110.1:621-640
AAACCTGGTCCGGATTCCATAGGAATCATT621GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCCTGCGGCCTTGT
Sequence 405 from Patent EP2304030.
JA866840.1:621-640
AAACCTGGTCCGGATTCCATAGGAATCATT621GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCCTGCGGCCTTGT
EST1144774 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1S605, mRNA sequence.
DR953235.1:118-137
AAGCCTGGTCCGGATTCCATTGGAATCATT118GCTATTTCTCATGGTTGCCCTGGTGTGGCAGCTCGAGCCTGCGGCCTAGT
EST1077575 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT566935.1:317-336
AAGCCTGGTCCGGATTCCATAGGAATCATT317GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCCTGCGGCCTTGT
GH_RMIRS_016_B07_061_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA sequence.
DW478795.1:29-48
ACCTGGTCCGGATTCCATAGGAATCATT29GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCCTGCGGCCTTGT
UFL_292_70 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES808067.1:400-419
AAGCCTGGTCCGGATTCCATAGGAATCATT400GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCCTGCGGCCTTGT
UFL_260_58 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES810681.1:400-419
AAGCCTGGTCCGGATTCCATAGGAATCATT400GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCCTGCGGCCTTGT
CCPG1238.b1 CCPG Aquilegia formosa 412 x Aquilegia pubescens pooled RNA (H) Aquilegia formosa x Aquilegia pubescens cDNA clone CCPG1238 5', mRNA sequence.
JZ017044.1:201-220
AAGCCTGGTCCGGATTCCATTGGAATCATT201GCTATTTCTCATGGTTGCCCTGGTGTGGCAGCTCGAGCCTGCGGCCTAGT
Arachis hypogaea DNA, clone: KICT06O07.
DH967633.1:717-736
CAGCCTGGTCCGGATTCCATTGGAATCGTT717GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCATGCGGGCTTCT
Gossypioides kirkii chromosome KI_05.
CP032247.1:9434185-9434204
CAGCCTGGTCCGGATTCCATAGGAATCATT9434185GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCCTGCGGCCTTGT
Gossypium raimondii isolate D5-4 chromosome D5_05.
CP032557.1:10345513-10345532
CAGCCTGGTCCGGATTCCATAGGAATCATT10345513GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCCTGCGGCCTTGT
Daucus carota subsp. sativus cultivar DH1 chromosome 2.
CP093344.1:50950642-50950661
TAGCCTGGTCCGGATTCCATTGGAATCGTT50950642GCTATTTCTCATGGTTGCCCTGGTGTGGCAGCACGAGCCTGTGGCCTGGT
Gossypium herbaceum isolate GPA1alz chromosome 5.
CP106702.1:12957343-12957362
CAGCCTGGTCCGGATTCCATAGGAATCATT12957343GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCCTGCGGCCTTGT
Daucus carota isolate Kuroda chromosome 2.
CP125302.1:48738163-48738182
TAGCCTGGTCCGGATTCCATTGGAATCGTT48738163GCTATTTCTCATGGTTGCCCTGGTGTGGCAGCACGAGCCTGTGGCCTGGT
Microcos paniculata chromosome 9b.
CP131455.1:22567260-22567279
CAGCCTGGTCCGGATTCCATTGGAATCGTT22567260GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCTTGCGGCCTTGT
Microcos paniculata chromosome 9a.
CP131464.1:23564685-23564704
CAGCCTGGTCCGGATTCCATTGGAATCGTT23564685GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCTTGCGGCCTTGT
Cucumis melo isolate PI 511890 chromosome 1.
CP136102.1:129867-129886
TAGCCTGGTCCGGATTCCATTGGAATCGTT129867GCTATTTCTCATGGTTGCCCTGGTGTGGCTGCACGTGCCTGCGGCCTGGT
Fragaria x ananassa cultivar Benihoppe chromosome 22.
CP139754.1:23543886-23543905
TAGCCTGGTCCGGATTCCATTGGAATCGTT23543886GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGAGCCTGCGGCCTGGT
Fragaria x ananassa cultivar Benihoppe chromosome 21.
CP139755.1:21931658-21931677
TAGCCTGGTCCGGATTCCATTGGAATCGTT21931658GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGAGCCTGCGGCCTGGT
Warburgia ugandensis isolate CL-2023a chromosome 8.
CP141133.1:20150193-20150212
CAGCCTGGTCCGGATTCCATTGGAATCGTT20150193GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGAGCTTGTGGTCTAGT
Chamaenerion angustifolium genome assembly, chromosome: 6.
OX328270.1:28618729-28618748
TAGCCTGGTCCGGATTCCATTGGAATCGTT28618729GCTATTTCTCATGGTTGCCCTGGTGTGGCAGCTCGAGCATGCGGCCTTGT
Hibiscus tridactylites genome assembly, chromosome: 13.
OY288277.1:6743509-6743528
CAGCCTGGTCCGGATTCCATAGGAATCGTT6743509GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCCTGTGGCCTTGT
Inga laurina genome assembly, chromosome: 6.
OY979706.1:64066885-64066904
CAGCCTGGTCCGGATTCCATTGGAATCGTT64066885GCTATTTCTCATGGTTGCCCTGGAGTGGCAGCCCGCGCATGCGGCCTTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGGCAACCATGAGAAATAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGCAACCATGAGAAATAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.481 | 0.472 | search_plus_done; http://172.18.8.135:50400/match?q=GGGCAACCATGAGAAATAGC&k=0&no_gap=0&offset=0&limit=50
1.186 | 0.705 | search_minus_done; http://172.18.8.135:50400/match?q=GCTATTTCTCATGGTTGCCC&k=0&no_gap=0&offset=0&limit=21
1.200 | 0.015 | cgi_end;

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