GGGenome Help | Japanese

Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 08:42:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Dianthus superbus Ds_CL9192Contig1 mRNA sequence.
JL394415.1:201-220
CAAGCAGCAAGCGAAGAGGAGACCCTTGCC201GGGCCCACCTAAGGAGATTACAACCGGAGTTTCTAGAAGCTTCTCGAAGG
Dianthus caryophyllus mRNA, clone: CES04G05, 5' end sequence.
FY383750.1:276-295
CCTTCGAGAAGCTTCTAGAAACTCCGGTTG276TAATCTCCTTAGGTGGGCCCGGCAAGGGTCTCCTCTTCGCTTGCTGCTTG
Dianthus caryophyllus mRNA, clone: CFES22I09, 5' end sequence.
FY402261.1:267-286
CCTTCGAGAAGCTTCTAGAAACTCCGGTTG267TAATCTCCTTAGGTGGGCCCGGCAAGGGTCTCCTCTTCGCTTGCTGCTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGGCCCACCTAAGGAGATTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGCCCACCTAAGGAGATTA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.105 | 0.097 | search_plus_done; http://172.18.8.135:50400/match?q=GGGCCCACCTAAGGAGATTA&k=0&no_gap=0&offset=0&limit=50
0.357 | 0.251 | search_minus_done; http://172.18.8.135:50400/match?q=TAATCTCCTTAGGTGGGCCC&k=0&no_gap=0&offset=0&limit=49
0.358 | 0.002 | cgi_end;

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