GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 12:45:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2389534-2389553
ATCAAGGGAGGTCTCCACCACGATCAAACA2389534GGGCTTCATCTCCAGTCAAACCCTCTCCTTCTCGCCGTCAAGATCCCTCT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2352719-2352738
ATCAAGGGAGGTCTCCACCATGATCAAACA2352719GGGCTTCATCTCCAGTCAAACCCTCTCCTTCTCGTCGTCAAGATCCCTCT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2446862-2446881
ATCAAGGGAGGTCTCCACCATGATCAAACA2446862GGGCTTCATCTCCAGTCAAACCCTCTCCTTCTCGTCGTCAAGATCCCTCT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2551626-2551645
ATCAAGGGAGGTCTCCACCATGATCAAACA2551626GGGCTTCATCTCCAGTCAAACCCTCTCCTTCTCGCCGTCAAGATCCCTCT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2339109-2339128
ATCAAGGGAGGTCTCCACCATGATCAAACA2339109GGGCTTCATCTCCAGTCAAACCCTCTCCTTCTCGCCGTCAAGATCCCTCT
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2511769-2511788
ATCAAGGGAGGTCTCCACCATGATCAAACA2511769GGGCTTCATCTCCAGTCAAACCCTCTCCTTCTCGCCGTCAAGATCCCTCT
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2504351-2504370
ATCAAGGGAGGTCTCCACCATGATCAAACA2504351GGGCTTCATCTCCAGTCAAACCCTCTCCTTCTCGCCGTCAAGATCCCTCT
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2560988-2561007
ATCAAGGGAGGTCTCCACCATGATCAAACA2560988GGGCTTCATCTCCAGTCAAACCCTCTCCTTCTCGCCGTCAAGATCCCTCT
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2595667-2595686
ATCAAGGGAGGTCTCCACCATGATCAAACA2595667GGGCTTCATCTCCAGTCAAACCCTCTCCTTCTCGCCGTCAAGATCCCTCT
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2560136-2560155
ATCAAGGGAGGTCTCCACCATGATCAAACA2560136GGGCTTCATCTCCAGTCAAACCCTCTCCTTCTCGCCGTCAAGATCCCTCT
Osmerus eperlanus genome assembly, chromosome: 21.
OY830034.1:5482584-5482603
TCAAAGAGGTGAATTCACGTGTTAATGGGT5482584TTTGACTGGAGATGAAGCCCCCTGAACGCCCTGTGTCCCGCCGCTGTCAA
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:9117922-9117941
AGAGGGATCTTGACGGCGAGAAGGAGAGGG9117922TTTGACTGGAGATGAAGCCCGGGTCAAAAGATATGGGTTTTTTTTACGGG
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38763979-38763998
AGAGGGATCTTGACGGCGAGAAGGAGAGGG38763979TTTGACTGGAGATGAAGCCCTGTTTGATCATGGTGGAGACCTCCCTTGAT
Plemyria rubiginata genome assembly, chromosome: 6.
OY754911.1:2788163-2788182
TATGATTCACCTGAATAAATACCTTTTGAC2788163TTTGACTGGAGATGAAGCCCAGACTGAGGCCTTAGGGCGGCCTAATAATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGGCTTCATCTCCAGTCAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGCTTCATCTCCAGTCAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.186 | 0.177 | search_plus_done; http://172.18.8.135:50400/match?q=GGGCTTCATCTCCAGTCAAA&k=0&no_gap=0&offset=0&limit=50
0.303 | 0.117 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGACTGGAGATGAAGCCC&k=0&no_gap=0&offset=0&limit=40
0.306 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).