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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 08:00:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH051_00623m, 5' end sequence.
AB450725.1:233-255
TAGAGGATAATTTAACAGACGTCCTACCTG233GGGGAAACAAACTAGAGCACAAATCCCATCAAATGCTTAGTACTCATCATCAT
Mdlv4-4042g10.y1 Mdlv4 Malus domestica cDNA clone Mdlv4-4042g10 5' similar to SW:RL5_ARATH P49227 60S RIBOSOMAL PROTEIN L5, mRNA sequence.
CV826074.1:123-145
TCGAGAATAATTAAACAGATGTCCTACGCG123GGGGAAACAAACTAGAGCACAAATACCATTAAATGCTTAGTACTCATCATCAT
Mdlv3_4033f20.y1 Mdlv3 Malus domestica cDNA clone Mdlv3_4033f20 5' similar to SW:RL5_SOLME P93779 60S RIBOSOMAL PROTEIN L5, mRNA sequence.
CV882447.1:268-290
TAGAGGATAATTTAAGAGACGTCCTACCAG268GGGGAAACAAACTAGAGCACAAATCCCATCAAATGCTTAGTACTCGTCATCAT
Mdlv4-4046m15.y1 Mdlv4 Malus domestica cDNA clone Mdlv4-4046m15 5' similar to SW:RL5_ORYSA P49625 60S RIBOSOMAL PROTEIN L5, mRNA sequence.
CX023050.1:112-134
TAGAGGATAATTTAAGAGACGTCCTACCAG112GGGGAAACAAACTAGAGCACAAATCCCATCAAATGCTTAGTACTCGTCATCAT
Mdas9008M17.g1 Apple_EST_Mdas Malus domestica cDNA similar to dbj|BAB33422.1| putative senescence-associated protein [Pisum sativum], mRNA sequence.
DR995279.1:171-193
TCGAGAATAATTAAACAGATGTCCTACGCG171GGGGAAACAAACTAGAGCACAAATACCATTAAATGCTTAGTACTCATCATCAT
Mdfb8006J14.g1 Apple_EST_Mdfb Malus domestica cDNA similar to ref|NP_566767.1| 60S ribosomal protein L5 (RPL5A) [Arabidopsis thaliana] gb|AAL06822.1| AT5g39740/MKM21_30 [Arabidopsis thaliana] gb|AAL38
DT001567.1:129-151
TCGAGAATAATTAAACAGATGTCCTACGCG129GGGGAAACAAACTAGAGCACAAATACCATTAAATGCTTAGTACTCATCATCAT
Mdfw2034B18_e16569.g1 Mdfw Malus domestica cDNA 5', mRNA sequence.
GO550967.1:314-336
TAGAGGATAATTTAAGAGACGTCCTACCAG314GGGGAAACAAACTAGAGCACAAATCCCATCAAATGCTTAGTACTCGTCATCAT
Mdrtp1005D12_e37736.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA 5' similar to dbj|BAB33422.1| putative senescence-associated protein [Pisum sativum], mRNA sequence.
GO561710.1:179-201
TCGAGAATAATTAAACAGATGTCCTACGCG179GGGGAAACAAACTAGAGCACAAATACCATTAAATGCTTAGTACTCATCATCAT
Mdlv4-4047L13_e29156.b1 Mdlv4 Malus domestica cDNA 3' similar to ref|NP_566767.1| 60S ribosomal protein L5 (RPL5A) [Arabidopsis thaliana] gb|AAL06822.1| AT5g39740/MKM21_30 [Arabidopsis thaliana] gb|AA
GO577789.1:263-285
TAGAGGATAATTTAAGAGACGTCCTACCAG263GGGGAAACAAACTAGAGCACAAATCCCATCAAATGCTTAGTACTCGTCATCAT
Pyrus pyrifolia mRNA, clone: NLE2_23_83, 3' end sequence, expressed in leaf.
HX745410.1:84-106
TATCGAGAATAATTAAACAGATGACCTAGG84GGGGAAACAAACTAGAGCACAAATCCCATTAAATGCTTAGTACTCATCATCAT
Pyrus pyrifolia mRNA, clone: NFR1_18_66, 5' end sequence, expressed in fruit.
HX747140.1:141-163
TATCGAGAATAATTAAACAGATGACCTAGG141GGGGAAACAAACTAGAGCACAAATCCCATTAAATGCTTAGTACTCATCATCAT
Pyrus pyrifolia mRNA, clone: NFW2_33_48, 5' end sequence, expressed in flower bud.
HX764633.1:235-257
TAGAGGATAATTTAACAGACGTCCTACCTG235GGGGAAACAAACTAGAGCACAAATCCCATCAAATGCTTAGTACTCATCATCAT
Pyrus pyrifolia mRNA, clone: NLE2_06_23, 5' end sequence, expressed in leaf.
HX767186.1:233-255
TAGAGGATAATTTAACAGACGTCCTACCTG233GGGGAAACAAACTAGAGCACAAATCCCATCAAATGCTTAGTACTCATCATCAT
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:386741-386763
TCAAGAATAATTAAACAGATGTCCTACGCG386741GGGGAAACAAACTAGAGCACAAATACCATTAAATGCTTAGTACTCATCATCAT
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:383522-383544
TCAAGAATAATTAAACAGATGTCCTACGCG383522GGGGAAACAAACTAGAGCACAAATACCATTAAATGCTTAGTACTCATCATCAT
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:371369-371391
TCGAGAATAATTAAACAGATGTCCTACGCG371369GGGGAAACAAACTAGAGCACAAATACCATTAAATGCTTAGTACTCATCATCAT
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:387680-387702
TCGAGAATAATTAAACAGATGTCCTACGCG387680GGGGAAACAAACTAGAGCACAAATACCATTAAATGCTTAGTACTCATCATCAT
Malus domestica genome assembly, chromosome: 2.
OU744543.1:368641-368663
TCGAGAATAATTAAACAGATGTCCTACGCG368641GGGGAAACAAACTAGAGCACAAATACCATTAAATGCTTAGTACTCATCATCAT
Malus domestica genome assembly, chromosome: 2.
OU744954.1:394053-394075
TCGAGAATAATTAAACAGATGTCCTACGCG394053GGGGAAACAAACTAGAGCACAAATACCATTAAATGCTTAGTACTCATCATCAT
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:41750825-41750847
TAGAGGATAATTTAACAGACGTCCTACCTG41750825GGGGAAACAAACTAGAGCACAAATCCCATCAAATGCTTAGTACTCATCATCAT
Mdfw2034b18.y1 Mdfw Malus domestica cDNA clone Mdfw2034b18 5', mRNA sequence.
CN578554.1:92-114
ATGATGACGAGTACTAAGCATTTGATGGGA92TTTGTGCTCTAGTTTGTTTCCCCCTGGTAGGACGTCTCTTAAATTATCCTCTA
000921AALA007307HT (AALA) Royal Gala 150 DAFB fruit cortex Malus domestica cDNA clone AALA007307, mRNA sequence.
CN864426.1:205-227
ATGATGACGAGTACTAAGCATTTGATGGGA205TTTGTGCTCTAGTTTGTTTCCCCCTGGTAGGACGTCTCTTAAATTATCCTCTA
Mdfw2066b05.y2 Mdfw Malus domestica cDNA clone Mdfw2066b05 5' similar to SW:RL5_SOLME P93779 60S RIBOSOMAL PROTEIN L5, mRNA sequence.
CO419389.1:375-397
ATGATGATGAGTACTAAGCATTTAATGGTA375TTTGTGCTCTAGTTTGTTTCCCCCGCGTAGGACATCTGTTTAATTATTCTCGA
Mdfrt3048g16.y1 Mdfrt Malus domestica cDNA clone Mdfrt3048g16 5' similar to SW:RL5_ARATH P49227 60S RIBOSOMAL PROTEIN L5, mRNA sequence.
CO754975.1:206-228
ATGATGATGAGTACTAAGCATTTAATGGTA206TTTGTGCTCTAGTTTGTTTCCCCCGCGTAGGACATCTGTTTAATTATTCTCGA
Mdlv4-4047k14.y1 Mdlv4 Malus domestica cDNA clone Mdlv4-4047k14 5' similar to SW:RL5_SOLME P93779 60S RIBOSOMAL PROTEIN L5, mRNA sequence.
CX023401.1:290-312
ATGATGACGAGTACTAAGCATTTGATGGGA290TTTGTGCTCTAGTTTGTTTCCCCCTGGTAGGACGTCTCTTAAATTATCCTCTA
Mdwdr7514P20.g1 Apple_EST_Mdwdr Malus domestica cDNA 5' similar to ref|NP_566767.1| 60S ribosomal protein L5 (RPL5A) [Arabidopsis thaliana] gb|AAL06822.1| AT5g39740/MKM21_30 [Arabidopsis thaliana] gb|
GO527586.1:512-534
ATGATGACGAGTACTAAGCATTTGATGGGA512TTTGTGCTCTAGTTTGTTTCCCCCTGGTAGGACGTCTCTTAAATTATCCTCTA
Pyrus pyrifolia mRNA, clone: NFW1_01_02, 5' end sequence, expressed in flower bud.
HX761164.1:287-309
ATGATGATGAGTACTAAGCATTTGATGGGA287TTTGTGCTCTAGTTTGTTTCCCCCAGGTAGGACGTCTGTTAAATTATCCTCTA
Pyrus pyrifolia mRNA, clone: NFW1_05_46, 5' end sequence, expressed in flower bud.
HX761527.1:287-309
ATGATGATGAGTACTAAGCATTTGATGGGA287TTTGTGCTCTAGTTTGTTTCCCCCAGGTAGGACGTCTGTTAAATTATCCTCTA
Pyrus pyrifolia mRNA, clone: NFW1_09_38, 5' end sequence, expressed in flower bud.
HX761833.1:535-557
ATGATGATGAGTACTAAGCATTTAATGGGA535TTTGTGCTCTAGTTTGTTTCCCCCCTAGGTCATCTGTTTAATTATTCTCGATA
TSA: Pyrus communis mRNA, contig: lc868.
FX609455.1:537-559
ATGATGATGAGTACTAAGCATTTGATGGGA537TTTGTGCTCTAGTTTGTTTCCCCCAGGTAGGACGTCTGTTAAATTATCCTCTA
TSA: Pyrus communis mRNA, contig: lc4706.
FX613293.1:315-337
ATGATGATGAGTACTAAGCATTTGATGGGA315TTTGTGCTCTAGTTTGTTTCCCCCAGGTAGGACGTCTGTTAAATTATCCTCTA
TSA: Pyrus x bretschneideri Unigene41056_XinShao mRNA sequence.
JR632709.1:458-480
ATGATGATGAGTACTAAGCATTTGATGGGA458TTTGTGCTCTAGTTTGTTTCCCCCAGGTAGGACGTCTGTTAAATTATCCTCTA
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:35585708-35585730
ATGATGATGAGTACTAAGCATTTAATGGTA35585708TTTGTGCTCTAGTTTGTTTCCCCCGCGTAGGACATCTGTTTAATTATTCTCGA
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:2386210-2386232
ATGATGACGAGTACTAAGCATTTGATGGGA2386210TTTGTGCTCTAGTTTGTTTCCCCCTGGTAGGACGTCTCTTAAATTATCCTCTA
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:37957758-37957780
ATGATGATGAGTACTAAGCATTTAATGGTA37957758TTTGTGCTCTAGTTTGTTTCCCCCGCGTAGGACATCTGTTTAATTATTCTCGA
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:2483261-2483283
ATGATGACGAGTACTAAGCATTTGATGGGA2483261TTTGTGCTCTAGTTTGTTTCCCCCTGGTAGGACGTCTCTTAAATTATCCTCTA
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:2446154-2446176
ATGATGACGAGTACTAAGCATTTGATGGGA2446154TTTGTGCTCTAGTTTGTTTCCCCCTGGTAGGACGTCTCTTAAATTATCCTCTA
Malus x robusta genome assembly, chromosome: 1.
OY720325.1:2260981-2261003
ATGATGACGAGTACTAAGCATTTGATGGGA2260981TTTGTGCTCTAGTTTGTTTCCCCCTGGTAGGACGTCTCTTAAATTATCCTCTA
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:36232892-36232914
ATGATGATGAGTACTAAGCATTTAATGGTA36232892TTTGTGCTCTAGTTTGTTTCCCCCGCGTAGGACATCTGTTTAATTATTCTCGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGGGAAACAAACTAGAGCACAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGGAAACAAACTAGAGCACAAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.816 | 0.807 | search_plus_done; http://172.18.8.135:50400/match?q=GGGGAAACAAACTAGAGCACAAA&k=0&no_gap=0&offset=0&limit=50
1.327 | 0.512 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGTGCTCTAGTTTGTTTCCCC&k=0&no_gap=0&offset=0&limit=30
1.340 | 0.012 | cgi_end;

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