GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-17 16:15:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TP_ABb0010J14.f TP_ABb Trifolium pratense genomic clone TP_ABb0010J14 5', genomic survey sequence.
HR258417.1:336-355
AAAAATTGAGATCGAAGAGCATTGTTGAAA336GGGGAATGAAATGAAAACCCTAAAACAATATCGATGTTGATGAAGAAGAT
TP_ABb0022B08.f TP_ABb Trifolium pratense genomic clone TP_ABb0022B08 5', genomic survey sequence.
HR266321.1:437-456
AAAAGTTGAGATCGAAGAGCATTGTTGAAA437GGGGAATGAAATGAAAACCCTAAAACAATACCGATGTTGATGAAGAAGAT
Trifolium repens isolate ACLI19 chromosome 07_Pall.
CP125849.1:43258008-43258027
GAGCATTGTTGAAACATGTAGTAGTTAAAA43258008GGGGAATGAAATGAAAACCCTAAGAAGATGCATAGAGAAACGATGGTATG
Trifolium repens isolate ACLI19 chromosome 07_Pall.
CP125849.1:43263101-43263120
GAGCATTGTTGAAACATGTAGTAGTTAAAA43263101GGGGAATGAAATGAAAACCCTAAGAAGATGCATAGAGAAACGATGGTATG
Trifolium dubium genome assembly, chromosome: 4.
OX638065.1:44402000-44402019
GAAGATTGTTGAAAGATGTGGTAGTTAAAA44402000GGGGAATGAAATGAAAACCCTAAGAAGATGCATAGAGAAACGATTGCATG
Trifolium dubium genome assembly, chromosome: 11.
OX638072.1:31714659-31714678
GAAGATTGATGAAAGATGTGGTAGTTAAAA31714659GGGGAATGAAATGAAAACCCTAAGAAGATGCATAGAGAAATGATGGCATG
Erodium maritimum genome assembly, chromosome: 1.
OY997588.1:133149850-133149869
ACACAAAAAACACCACACAATGAAACCACA133149850GGGGAATGAAATGAAAACCCCACCCCCCCTAGAAGGTCGCATCCTTCATC
Apteryx australis mantelli genome assembly, scaffold: scaffold31.
LK064661.1:1830584-1830603
TCACTCTCTTGCTGCTTAAGCTGGCAAATA1830584GGGTTTTCATTTCATTCCCCTTTCCTGCTAGTAGCATTTTCCTTATTACT
Trifolium repens mRNA, clone: WCC16d21_042, unspecified EST.
FY459634.1:207-226
CATACCATCGTTTCTCTATGCATCTTCTTA207GGGTTTTCATTTCATTCCCCTTTTAACTACTACATGTTTCAACAATGCTC
Erodium maritimum genome assembly, chromosome: 2.
OY997589.1:81836050-81836069
AAGATGAAGGCTGCGACCTTTTAGGGGGTG81836050GGGTTTTCATTTCATTCCCCTGTGGTTTCATTGTGTGGTGTTCTTTTTTG
Erodium maritimum genome assembly, chromosome: 2.
OY997589.1:84060743-84060762
AAGATGAAGGCTGCGTCCTTCTAGGGGGTG84060743GGGTTTTCATTTCATTCCCCTTCATTGTGTGGTGTTCTTTTTTATGCCTT
Erodium maritimum genome assembly, chromosome: 7.
OY997594.1:4935115-4935134
TCTCAGTTCAGAAGAATGTTATTCAAGGAG4935115GGGTTTTCATTTCATTCCCCTTTAATTGGTCATTTGGATCTTCTTCAATT
Erodium maritimum genome assembly, chromosome: 7.
OY997594.1:56163162-56163181
AAGATGAAGGTTGCGACCTTCTAGGGGGTG56163162GGGTTTTCATTTCATTCCCCTGTGGTTTCAATGTGTGGTGTTCTTTTTTG
Eustalomyia histrio genome assembly, chromosome: 4.
OX456526.1:135711072-135711091
CGTTCTATTCCATTTCGTTTCCCTTGTCTA135711072GGGTTTTCATTTCATTCCCCTTGTCTAGTGTTTTAAGTCCATTTCGTTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGGGAATGAAATGAAAACCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGGAATGAAATGAAAACCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.180 | 0.171 | search_plus_done; http://172.18.8.135:50400/match?q=GGGGAATGAAATGAAAACCC&k=0&no_gap=0&offset=0&limit=50
0.312 | 0.133 | search_minus_done; http://172.18.8.135:50400/match?q=GGGTTTTCATTTCATTCCCC&k=0&no_gap=0&offset=0&limit=43
0.317 | 0.005 | cgi_end;

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