GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 03:46:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 2.
OU383774.1:93922645-93922663
AACAGGATAAAAAGGAGTCTGTTAGGGTTT93922645GGGGTACAATGCCAATTCACAAAAACCGGAAAATTTTGTGGAAACTTCC
Cinclus cinclus genome assembly, chromosome: 2.
OY759678.1:94468202-94468220
AACAGGATAAAAAGGAGTCTGGTAAGGTTT94468202GGGGTACAATGCCAATTCACATAAACCAGAAAACTTGATAGAAACTTCC
TSA: Pyrus pyrifolia mRNA, contig: contig_28852revcomp.
FX431558.1:625-643
TTCAAAGCTCTTTCCAACCTTGTCTCGAAT625GGGGTACAATGCCAATTCACTCTCCCGTCAAGACCTAATCGAAGGAGCC
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:28930918-28930936
TCAAAGCTCTTTCCAACCTTGTCTCGAATG28930918GGGGTACAATGCCAATTCACTCTCCCGTCAAGACCTAATCGAAGGAGCC
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:30224574-30224592
TTCAAAGCTCTTTCCAACCTTGTCTCGAAT30224574GGGGTACAATGCCAATTCACTCTCCCGTCAAGACCTAATCGAAGGAGCC
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:27914633-27914651
TCAAAGCTCTTTCCAACCTTGTCTCGAATG27914633GGGGTACAATGCCAATTCACTCTCCCGTCAAGACCTAATCGAAGGAGCC
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:28370924-28370942
TTCAAAGCTCTTTCCAACCTTGTCTCGAAT28370924GGGGTACAATGCCAATTCACTCTCCCGTCAAGACCTAATCGAAGGAGCC
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:29837888-29837906
TTCAAAGCTCTTTCCAACCTTGTCTCGAAT29837888GGGGTACAATGCCAATTCACTCTCCCGTCAAGACCTAATCGAAGGAGCC
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:27334239-27334257
AAAGCTCTTTCCAACCTTGTCTCGAATGGG27334239GGGGTACAATGCCAATTCACTCTCCCGTCAAGACCTAATCGAAGGAGCC
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:29711936-29711954
TTCAAAGCTCTTTCCAACCTTGTCTCGAAT29711936GGGGTACAATGCCAATTCACTCTCCCGTCAAGACCTAATCGAAGGAGCC
Malus domestica genome assembly, chromosome: 10.
OU696686.1:29579829-29579847
TTCAAAGCTCTTTCCAACCTTGTCTCGAAT29579829GGGGTACAATGCCAATTCACTCTCCCGTCAAGACCTAATCGAAGGAGCC
Malus domestica genome assembly, chromosome: 10.
OU744551.1:29750931-29750949
TTCAAAGCTCTTTCCAACCTTGTCTCGAAT29750931GGGGTACAATGCCAATTCACTCTCCCGTCAAGACCTAATCGAAGGAGCC
Malus domestica genome assembly, chromosome: 12.
OU744553.1:28133579-28133597
TTCAAAGCTCTTTCCAACCTTGTCTCGAAT28133579GGGGTACAATGCCAATTCACTCTCCCATCAAGACCTAATCGAAGGAGCC
Malus domestica genome assembly, chromosome: 10.
OU744962.1:30482606-30482624
TTCAAAGCTCTTTCCAACCTTGTCTCGAAT30482606GGGGTACAATGCCAATTCACTCTCCCGTCAAGACCTAATCGAAGGAGCC
Malus domestica genome assembly, chromosome: 12.
OU744964.1:27309960-27309978
TTCAAAGCTCTTTCCAACCTTGTCTCGAAT27309960GGGGTACAATGCCAATTCACTCTCCCATCAAGACCTAATCGAAGGAGCC
Malus domestica genome assembly, chromosome: 10.
OU745000.1:29574937-29574955
TTCAAAGCTCTTTCCAACCTTGTCTCGAAT29574937GGGGTACAATGCCAATTCACTCTCCCGTCAAGACCTAATCGAAGGAGCC
Malus domestica genome assembly, chromosome: 12.
OU745002.1:27341019-27341037
TTCAAAGCTCTTTCCAACCTTGTCTCGAAT27341019GGGGTACAATGCCAATTCACTCTCCCATCAAGACCTAATCGAAGGAGCC
Vicia faba genome assembly, chromosome: 4.
OX451739.1:3792176-3792194
CAAACATAACAAAAACAATGTGTTACCACT3792176GGGGTACAATGCCAATTCAATTATAAATTGCATTCAATTAAATATGTAA
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:28092767-28092785
TTCAAAGCTCTTTCCAACCTTGTCTCGAAT28092767GGGGTACAATGCCAATTCACTCTCCCGTCAAGACCTAATCGAAGGAGCC
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:28410816-28410834
TTCAAAGCTCTTTCCAACCTTGTCTCGAAT28410816GGGGTACAATGCCAATTCACTCTCCCGTCAAGACCTAATCGAAGGAGCC
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:19850313-19850331
TTCAAAGCTCTTTCCAACCTTGTCTCGAAT19850313GGGGTACAATGCCAATTCACTCTCCTGTCAAGACCTAATCGAAGGAGCC
TSA: Pyrus communis mRNA, contig: lc28950.
FX637186.1:208-226
GGCTCCTTCGATTAGGTCTTGACGGGAGAG208TGAATTGGCATTGTACCCCATTCGAGACAAGGTTGGAAAGAGCTTTGAA
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:4964050-4964068
GGCTCCTTCGATTAGGTCTTGATGGGAGAG4964050TGAATTGGCATTGTACCCCATTCGAGACAAGGTTGGAAAGAGCTTTGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGGGTACAATGCCAATTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGGTACAATGCCAATTCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.115 | 0.107 | search_plus_done; http://172.18.8.135:50400/match?q=GGGGTACAATGCCAATTCA&k=0&no_gap=0&offset=0&limit=50
0.150 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=TGAATTGGCATTGTACCCC&k=0&no_gap=0&offset=0&limit=29
0.152 | 0.001 | cgi_end;

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