GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:33:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Thunnus albacares genome assembly, chromosome: 6.
OU607597.1:23072656-23072675
AATTGTCAAGTGCCCATATGAATATTGAAA23072656GGGGTTTTGCTGCTGTTATCTTTCATCCTGCTAATACTGGCCATTAAAAG
VUL020D16.F VUL Phaseolus vulgaris genomic 5', genomic survey sequence.
JY932501.1:292-311
TAATGAAAAACACACCCCGGAATCTTGTGA292GGGGTTTTGCTGCTGTTATCTCTTCCATAATTGAACCCCAAAATGTTCAT
Pseudomonas chlororaphis subsp. aurantiaca Tre132 DNA, complete genome.
AP020336.1:2003338-2003357
TTCTGGGCCAGGGTGTCGGCGTGCAGGGTT2003338GGGGTTTTGCTGCTGTTATCGGCCTTGGAAACGTTCACCTCGTCCGAGCT
Thunnus maccoyii genome assembly, chromosome: 6.
OU343196.1:12869745-12869764
CTTTTAATGGCCAGTATTAGCAGGATGAAA12869745GATAACAGCAGCAAAACCCCTTTCAATATTCATATGGGCACTTGACAATT
Thunnus thynnus genome assembly, chromosome: 7.
OZ004738.1:13002597-13002616
CTTTTAATGGCCAGTATTAGCAGGATGAAA13002597GATAACAGCAGCAAAACCCCTTTCAATATTCATATGGGCACTTGACAATT
Solanum melongena mRNA, clone: CAL03G21, 5'end, expressed in callus at 3d after subculture.
FS009356.1:6-25
AATGA6GATAACAGCAGCAAAACCCCCAAATACTCTGCAATTCTGAGCTTCCACCC
Solanum melongena mRNA, clone: PED04P05, 5'end, expressed in peduncle at anthesis.
FS035701.1:9-28
AGGAATGA9GATAACAGCAGCAAAACCCCCAAATACTCTGCAATTCTGAGCTTCCACCC
Solanum melongena mRNA, clone: SmFL03F09, 5'end.
FS068470.1:2-21
A2GATAACAGCAGCAAAACCCCCAAATACTCTGCAATTCTGAGCTTCCACCC
Solanum melongena mRNA, clone: YFR02N17, 5'end, expressed in fruit at 2w after anthesis.
FS095594.1:2-21
A2GATAACAGCAGCAAAACCCCCAAATACTCTGCAATTCTGAGCTTCCACCC
Solanum torvum mRNA, clone: TVR16F03, 5'end, expressed in root at vegetative stage, 2 months after germination.
FS113875.1:6-25
AATGA6GATAACAGCAGCAAAACCCCCAAATACTCTGCAATTCTGAGCTTCCACCC
Solanum torvum mRNA, clone: TVR32F22, 5'end, expressed in root at vegetative stage, 2 months after germination.
FS123280.1:6-25
AATGA6GATAACAGCAGCAAAACCCCCAAATACTCTGCAATTCTGAGCTTCCACCC
Darwinula stevensoni.
LR899872.1:27082-27101
GTGGTACTGAGACCCGAGGACATGGACCCA27082GATAACAGCAGCAAAACCCCGCTTTCCTACAACAAGGAGCCGACCAATAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGGGTTTTGCTGCTGTTATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGGTTTTGCTGCTGTTATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.167 | 0.159 | search_plus_done; http://172.18.8.135:50400/match?q=GGGGTTTTGCTGCTGTTATC&k=0&no_gap=0&offset=0&limit=50
0.661 | 0.493 | search_minus_done; http://172.18.8.135:50400/match?q=GATAACAGCAGCAAAACCCC&k=0&no_gap=0&offset=0&limit=47
0.667 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).