GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 07:19:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2AU09JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW730879.1:387-408
ATGAATTTCTTGAGGTGTCTCATGTATTCA387GGGTATTGTTCAAGATCGCAGTGGTTCCCTCCTTCCACCCAAAGCGGCTCAT
RR4FE72JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD554797.1:545-566
ATGAATTTCTTGAGGTGTCTCATGTATTCA545GGGTATTGTTCAAGATCGCAGTGGTTCCCTCCTTCCACCCAAAGCGGCTCAT
RS2FP83JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD575220.1:508-529
ATGAATTTCTTGAGGTGTCTCATGTATTCA508GGGTATTGTTCAAGATCGCAGTGGTTCCCTCCTTCCACCCAAAGCGGCTCAT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_8935.
FX664605.1:529-550
ATGAATTTCTTGAGGTGTCTCATGTATTCA529GGGTATTGTTCAAGATCGCAGTGGTTCCCTCCTTCCACCCAAAGCGGCTCAT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_56715.
FX755066.1:459-480
ATGAATTTCTTGAGGTGTCTCATGTATTCA459GGGTATTGTTCAAGATCGCAGTGGTTCCCTCCTTCCACCCAAAGCGGCTCAT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:67215-67236
ATGAATTTCTTGAGGTGTCTCATGTATTCA67215GGGTATTGTTCAAGATCGCAGTGGTTCCCTCCTTCCACCCAAAGCGGCTCAT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:67215-67236
ATGAATTTCTTGAGGTGTCTCATGTATTCA67215GGGTATTGTTCAAGATCGCAGTGGTTCCCTCCTTCCACCCAAAGCGGCTCAT
JP 2011188846-A/131: Method of Distinglishing Radish Varieties.
HV516432.1:1-22
1ACTGCGATCTTGAACAATACCC
RR3A027TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV547544.1:526-547
ATGAGCCGCTTTGGGTGGAAGGAGGGAACC526ACTGCGATCTTGAACAATACCCTGAATACATGAGACACCTCAAGAAATTCAT
RS2G614TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD945986.1:31-52
GGGAGCCGCTTTGGGTGGAAGGAGGGAACC31ACTGCGATCTTGAACAATACCCTGAATACATGAGACACCTCAAGAAATTCAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGGTATTGTTCAAGATCGCAGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGTATTGTTCAAGATCGCAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.482 | 0.473 | search_plus_done; http://172.18.8.135:50400/match?q=GGGTATTGTTCAAGATCGCAGT&k=0&no_gap=0&offset=0&limit=50
0.736 | 0.253 | search_minus_done; http://172.18.8.135:50400/match?q=ACTGCGATCTTGAACAATACCC&k=0&no_gap=0&offset=0&limit=43
0.738 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).