GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 17:41:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Musa acuminata AAA Group Unigene3807_B1 mRNA sequence.
JV333118.1:329-348
CACCAAAACCAGAATCCTAATCAGACCAGG329GGGTCCACCAGAAATAGCAATGGTGACGTTAACAATGGCAGGAACACTAA
Musa acuminata subsp. malaccensis isolate AA chromosome 1.
CP126370.1:995284-995303
CACCAAAACCAGAATCCTAATCAGACCAGG995284GGGTCCACCAGAAATAGCAATGGTGACATTAACAATGGCAGGAACACTAA
Musa acuminata subsp. malaccensis isolate AA chromosome 12.
CP126381.1:979541-979560
CACCAAAACCAGAATCCTAATCAGACCAGG979541GGGTCCACCAGAAATAGCAATGGTGACATTAACAATGGCAGGAACACTAA
TSA: Musa acuminata AAA Group Unigene18695_NK1 mRNA sequence.
JV415204.1:1142-1161
TTAGTGTTCCTGCCATTGTTAATGTCACCA1142TTGCTATTTCTGGTGGACCCCCTGGTCTGATTAGGATTCTGGTTTTGGTG
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A04.
HG996469.1:43657281-43657300
TTAGTGTTCCTGCCATTGTTAATGTCACCA43657281TTGCTATTTCTGGTGGACCCCCTGGTCTGATTAGGATTCTGGTTTTGGTG
Musa schizocarpa genome assembly, chromosome: S04.
LS990918.1:48187587-48187606
TTAGTGTTCCTGCCATTGTTAACGTCACCA48187587TTGCTATTTCTGGTGGACCCCCTGGTCTGATTAGGATTCTGGTTTTGGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGGTCCACCAGAAATAGCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGTCCACCAGAAATAGCAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.111 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=GGGTCCACCAGAAATAGCAA&k=0&no_gap=0&offset=0&limit=50
0.152 | 0.040 | search_minus_done; http://172.18.8.135:50400/match?q=TTGCTATTTCTGGTGGACCC&k=0&no_gap=0&offset=0&limit=47
0.153 | 0.002 | cgi_end;

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