GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 05:48:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:32893257-32893278
ATTTTCATACTTGTGACTCTTCTCAAAATT32893257GGGTTAGGTTGTCTTCTCTCCTAAACTTCAACAGCTAAACAGCCTATATATA
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141943.1:33726546-33726567
ATTTTCATACTTGTGACTCTTCTCAAAATT33726546GGGTTAGGTTGTCTTCTCTCCTAAACTTCAACAGCTAAACAGCCTATATATA
Malus x robusta genome assembly, chromosome: 11.
OY720335.1:32939823-32939844
ATTTTCATACTTGTGACTCTTCTCAAAATT32939823GGGTTAGGTTGTCTTCTCTCCTAAACTTCAACAGCTAAACAGCCTATATATA
Pyrus communis genome assembly, chromosome: 11.
OY757078.1:25978628-25978649
ATTTTCATACTTGTGACTCTTCTCACAATT25978628GGGTTAGGTTGTCTTCTCTCCTAAACTTCAACAGCTAAACAGCCTATATATA
Hyposoter dolosus genome assembly, chromosome: 8.
OY998136.1:3741990-3742011
CGCGGGTTTCGTGAAGATTCACTATTTTTG3741990GGGTTAGGTTGTCTTCTCTCCTCACGGGATTCGAAGAAGGGACGCCGTGTTG
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:1117597-1117618
TATATATAGGTTGTTTAGCTGTTGAAGTTT1117597AGGAGAGAAGACAACCTAACCCAATTTTGAGAAGAGTCACAAGTATGAAAAT
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141986.1:1116048-1116069
TATATATAGGCTGTTTAGCTGTTGAAGTTT1116048AGGAGAGAAGACAACCTAACCCAATTTTGAGAAGAGTCACAAGTATGAAAAT
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143374.1:1213818-1213839
TATATATAGGCTGTTTAGCTGTTGAAGTTT1213818AGGAGAGAAGACAACCTAACCCAATTTTGAGAAGAGTCACAAGTATGAAAAT
Malus domestica genome assembly, chromosome: 17.
OU696693.1:1251480-1251501
TATATATAGGCTGTTTAGCTGTTGAAGTAT1251480AGGAGAGAAGACAACCTAACCCAATTTTGAGAAGAGTCACAAGTATGAAAAT
Malus domestica genome assembly, chromosome: 17.
OU744558.1:1268058-1268079
TATATATAGGCTGTTTAGCTGTTGAAGTTT1268058AGGAGAGAAGACAACCTAACCCAATTTTGAGAAGAGTCACAAGTATGAAAAT
Malus domestica genome assembly, chromosome: 17.
OU744969.1:1269108-1269129
TATATATAGGCTGTTTAGCTGTTGAAGTTT1269108AGGAGAGAAGACAACCTAACCCAATTTTGAGAAGAGTCACAAGTATGAAAAT
Malus domestica genome assembly, chromosome: 17.
OU745007.1:1268776-1268797
TATATATAGGCTGTTTAGCTGTTGAAGTTT1268776AGGAGAGAAGACAACCTAACCCAATTTTGAGAAGAGTCACAAGTATGAAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGGTTAGGTTGTCTTCTCTCCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGTTAGGTTGTCTTCTCTCCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.094 | 0.085 | search_plus_done; http://172.18.8.135:50400/match?q=GGGTTAGGTTGTCTTCTCTCCT&k=0&no_gap=0&offset=0&limit=50
0.113 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=AGGAGAGAAGACAACCTAACCC&k=0&no_gap=0&offset=0&limit=45
0.118 | 0.005 | cgi_end;

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