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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:36:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GA__Eb0007F01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0007F01f, mRNA sequence.
BF270201.2:99-118
GTGTTGTCCATTGTTGTAGTTGTTTAAGTG99GGGTTATTGACCCCTGTAAATTAGTGACACTATAAGATGGTTAAAGGTTT
GR__Ea49I10.r GR__Ea Gossypium raimondii cDNA clone GR__Ea49I10 3', mRNA sequence.
CO084098.1:546-565
CTGTTGTCCATTGTTGTAGTTGTTTAAGTG546GGGTTATTGACCCCTGTAAATTAGTGACACTATAAGATGGTTAAAGGTTT
GR__Eb0042N18.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0042N18 3', mRNA sequence.
CO110120.1:246-265
CTGTTGTCCATTGTTGTAGTTGTTTAAGTG246GGGTTATTGACCCCTGTAAATTAGTGACACTATAAGATGGTTAAAGGTTT
GH_TMIRS_076_D06_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW503659.1:505-524
CTGTTGTCCATTGTTGTAGTTGTTTAAGTG505GGGTTATTGACCCCTGTAAATTAGTGACACTATAAGATGGTTAAAGGTTT
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:94112463-94112482
GTGTTGTCCATTGTTGTAGTTGTTTAAGTG94112463GGGTTATTGACCCCTGTAAATTAGTGACACTATAAGATGGTTAAAGGTTT
Gossypium bickii isolate GPG1lz chromosome 2.
CP106718.1:107241314-107241333
GTGTTGTCCATTGTTGTAGTTGTTTAAGTG107241314GGGTTATTGACCCCTGTAAATTAGTGACACTATAAGATGGTTAAAGGTTT
Gossypium rotundifolium isolate GPK201 chromosome 2.
CP106723.1:138818562-138818581
GTGTTGTCCATTGTTGTAGTTGTTTAAGTG138818562GGGTTATTGACCCCTGTAAATTAGTGACACAATAAGATGGTTAAAGGTTT
GA__Ed0033G11r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0033G11r, mRNA sequence.
BQ410754.1:50-69
AAACCTTTAACCATCTTATAGTGTCACTAA50TTTACAGGGGTCAATAACCCCACTTAAACAACTACAACAATGGACAACAC
GA__Ed0087F01r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0087F01r, mRNA sequence.
BQ414505.1:278-297
AAACCTTTAACCATCTTATAGTGTCACTAA278TTTACAGGGGTCAATAACCCCACTTAAACAACTACAACAATGGACAACAC
GR__Eb0042N18.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0042N18 5', mRNA sequence.
CO110119.1:309-328
AAACCTTTAACCATCTTATAGTGTCACTAA309TTTACAGGGGTCAATAACCCCACTTAAACAACTACAACAATGGACAACAG
GH_CHX13A06.r GH_CHX Gossypium hirsutum cDNA clone GH_CHX13A06 3', mRNA sequence.
DT463066.1:210-229
AAACCTTTAACCATCTTATAGTGTCACTAA210TTTACAGGGGTCAATAACCCCACTTAAACAACTACAACAATGGACAACAG
GH_HYPT_01-01-16R_D12_InvR_22Apr04_090_R Stem - 3 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW226051.1:329-348
AAACCTTTAACCATCTTATAGTGTCACTAA329TTTACAGGGGTCAATAACCCCACTTAAACAACTACAACAATGGACAACAG
Gossypium raimondii isolate D5-4 chromosome D5_02.
CP032554.1:746790-746809
AAACCTTTAACCATCTTATAGTGTCACTAA746790TTTACAGGGGTCAATAACCCCACTTAAACAACTACAACAATGGACAACAG
Gossypium turneri isolate D10-2 chromosome D10_02.
CP032572.1:703357-703376
AAACCTTTAGCCATCTTATAGTGCCACTAA703357TTTACAGGGGTCAATAACCCCACTGAAACAACTGCAACAATGGACAACAG
Gossypium herbaceum isolate GPA1alz chromosome 2.
CP106707.1:748996-749015
AAACCTTTAACCATCTTATAGTGTCACTAA748996TTTACAGGGGTCAATAACCCCACTTAAACAACTACAACAATGGACAACAC
Pyrausta purpuralis genome assembly, chromosome: 9.
OZ001651.1:12149978-12149997
AAGGCTCAATAATCTAATCTATTTTTCTAA12149978TTTACAGGGGTCAATAACCCGTGCCCTCGGAGTACTAAAACCGAAACACG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGGTTATTGACCCCTGTAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGTTATTGACCCCTGTAAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.403 | 0.394 | search_plus_done; http://172.18.8.135:50400/match?q=GGGTTATTGACCCCTGTAAA&k=0&no_gap=0&offset=0&limit=50
0.695 | 0.292 | search_minus_done; http://172.18.8.135:50400/match?q=TTTACAGGGGTCAATAACCC&k=0&no_gap=0&offset=0&limit=43
0.701 | 0.006 | cgi_end;

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