GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 20:17:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 1070 from patent US 8937215.
HK371708.1:108-130
TACAAAATGGCGATGATTCCAAGCTTCTTC108GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
Sequence 1072 from patent US 8937215.
HK371710.1:190-212
TACAAAATGGCGATGATTCCAAGCTTCTTC190GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
Sequence 1070 from patent US 9574200.
KH564262.1:108-130
TACAAAATGGCGATGATTCCAAGCTTCTTC108GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
Sequence 1072 from patent US 9574200.
KH564264.1:190-212
TACAAAATGGCGATGATTCCAAGCTTCTTC190GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
Sequence 1070 from patent US 10227607.
MM771261.1:108-130
TACAAAATGGCGATGATTCCAAGCTTCTTC108GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
Sequence 1072 from patent US 10227607.
MM771263.1:190-212
TACAAAATGGCGATGATTCCAAGCTTCTTC190GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
Sequence 1070 from patent US 10883115.
MX197427.1:108-130
TACAAAATGGCGATGATTCCAAGCTTCTTC108GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
Sequence 1072 from patent US 10883115.
MX197429.1:190-212
TACAAAATGGCGATGATTCCAAGCTTCTTC190GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
Sequence 1070 from patent US 11530418.
OO985938.1:108-130
TACAAAATGGCGATGATTCCAAGCTTCTTC108GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
Sequence 1072 from patent US 11530418.
OO985940.1:190-212
TACAAAATGGCGATGATTCCAAGCTTCTTC190GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
Manihot esculenta mRNA, clone: CAS01_004_L17, 5'end.
DB921378.1:109-131
TACAAAATGGCGATGATTCCAAGCTTCTTC109GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
Manihot esculenta mRNA, clone: CAS01_016_L21, 5'end.
DB925724.1:106-128
TACAAAATGGCGATGATTCCAAGCTTCTTC106GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCT
Manihot esculenta mRNA, clone: CAS01_024_M20, 5'end.
DB928617.1:106-128
TACAAAATGGCGATGATTCCAAGCTTCTTC106GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
Manihot esculenta mRNA, clone: CAS01_032_K23, 5'end.
DB931493.1:106-128
TACAAAATGGCGATGATTCCAAGCTTCTTC106GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
CAST077G02 cassava tuber Manihot esculenta cDNA clone CAST077G02, mRNA sequence.
DR086686.1:64-86
TACAAAATGGCGATGATTCCAAGCTTCTTC64GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
CV01007B1A09.f1 CV01-normalized library Manihot esculenta cDNA clone CV01007B1A09.f1, mRNA sequence.
DV442573.1:79-101
TACAAAATGGCGATGATTCCAAGCTTCTTC79GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
CV02003B1A04.f1 CV02-normalized library Manihot esculenta cDNA clone CV02003B1A04.f1, mRNA sequence.
DV450142.1:53-75
TACAAAATGGTGATGATTCCAAGCTTCTTC53GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
U_UZ-100602_plate11e17.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG991072.1:123-145
TACAAAATGGCGATGATTCCAAGCTTCTTC123GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
U_UZ-100602_plate11o18.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG991282.1:122-144
TACAAAATGGCGATGATTCCAAGCTTCTTC122GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA
U_UZ-100602_plate37p06.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG999532.1:67-89
TACAAAATGGCGATGATTCCAAGCTTCTTC67GGTAACCGACGAAGCAGCATCTTCGATCCATTCAATTCTTTCGACCTGTGGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTAACCGACGAAGCAGCATCTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTAACCGACGAAGCAGCATCTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.029 | 1.020 | search_plus_done; http://172.18.8.135:50400/match?q=GGTAACCGACGAAGCAGCATCTT&k=0&no_gap=0&offset=0&limit=50
1.071 | 0.042 | search_minus_done; http://172.18.8.135:50400/match?q=AAGATGCTGCTTCGTCGGTTACC&k=0&no_gap=0&offset=0&limit=30
1.071 | 0.000 | cgi_end;

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