GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 08:31:13, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ovis aries breed hu sheep isolate hu3095 chromosome 3.
CP162242.1:226568556-226568575
GTGTATTTACCGGCGATTCAGCCGTCTCCA226568556GGTACTTGCCCAAGAGATGCGAAGCCCGTGTCTGCACAGACACTGGTACA
Ovis aries breed Hu sheep isolate HU3095-Father chromosome 3.
CP162275.1:224918197-224918216
GTGTATTTACCGGCGATTCAGCCGTCTCCA224918197GGTACTTGCCCAAGAGATGCGAAGCCCGTGTCTGCACAGACACTGGTACA
Ovis aries breed Hu sheep isolate HU3095-Mother chromosome 3.
CP162339.1:226022645-226022664
GTGTATTTACCGGCGATTCAGCCGTCTCCA226022645GGTACTTGCCCAAGAGATGCGAAGCCCGTGTCTGCACAGACACTGGTACA
Cucumis melo subsp. agrestis EST, clone AI_09-G02-M13R.
AM714605.2:430-449
GGTTCAGGTGGTAATAGTTCAACGGGCGGA430GGTACTTGCCCAAGAGATGCTCTCAAGATAGGTGTATGTGCTAGAGTGCT
Cucumis melo subsp. agrestis EST, clone AI_13-E05-M13R.
AM716014.2:433-452
GGTTCAGGTGGTAATAGTTCAACGGGCGGA433GGTACTTGCCCAAGAGATGCTCTCAAGATAGGTGTATGTGCTAGAGTGCT
MC224 Melon Lambda Zap Express Library Cucumis melo cDNA clone MC224 5', mRNA sequence.
CF674925.1:34-53
GGTTCAGGTGGNAATAGTTCAACGGGCGGA34GGTACTTGCCCAAGAGATGCTCTCAAGATAGGTGTATGTGCTAGAGTGCT
EST11043229 PFLP2 library Cucumis melo cDNA clone DA10YN23FM1, mRNA sequence.
JG501516.1:428-447
GGTTCAGGTGGTAATAGTTCAACGGGCGGA428GGTACTTGCCCAAGAGATGCTCTCAAGATAGGTGTATGTGCTAGAGTGCT
EST11052725 VFTP2 library Cucumis melo cDNA clone HA9YK15FM1, mRNA sequence.
JG511012.1:452-471
GGTTCAGGTGGTAATAGTTCAACGGGCGGA452GGTACTTGCCCAAGAGATGCTCTCAAGATAGGTGTATGTGCTAGAGTGCT
EST11093731 SFLP2 library Cucumis melo cDNA clone FA1YL16FM1, mRNA sequence.
JG552018.1:446-465
GGTTCAGGTGGTAATAGTTCAACGGGCGGA446GGTACTTGCCCAAGAGATGCTCTCAAGATAGGTGTATGTGCTAGAGTGCT
Cucumis melo isolate PI 511890 chromosome 6.
CP136105.1:33293957-33293976
GGTTCAGGTGGTAATAGTTCAACGGGCGGA33293957GGTACTTGCCCAAGAGATGCTCTCAAGATAGGTGTATGTGCTAGAGTGCT
Cucumis melo genomic chromosome, chr_6.
LN713260.1:33519348-33519367
GGTTCAGGTGGTAATAGTTCAACGGGCGGA33519348GGTACTTGCCCAAGAGATGCTCTCAAGATAGGTGTATGTGCTAGAGTGCT
Ranunculus sceleratus genome assembly, chromosome: 2.
OZ205664.1:216282138-216282157
AAGCCAACTCCTACACCCACCCCTTCATCA216282138GGTACTTGCCCAAGAGATGCTCTTAAGCTAGGTGTGTGTGCTAATGTTCT
Ranunculus sceleratus genome assembly, chromosome: 5.
OZ205667.1:184115337-184115356
AAGCCAACTCCTACACCCACCCCTTCGTCC184115337GGTACTTGCCCAAGAGATGCTCTTAAGCTAGGTGTGTGTGCTAATGTTCT
Cucumis melo genomic scaffold, anchoredscaffold00021.
LN681860.1:2420493-2420512
AGCACTCTAGCACATACACCTATCTTGAGA2420493GCATCTCTTGGGCAAGTACCTCCGCCCGTTGAACTATTACCACCTGAACC
Hydra vulgaris strain AEPx105 chromosome 09.
CP147946.1:10829542-10829561
CTTTCATTAATGGTTACTTATTATACTATT10829542GCATCTCTTGGGCAAGTACCAATTATACAAAATTAAAAAAACTTTACACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTACTTGCCCAAGAGATGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTACTTGCCCAAGAGATGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.516 | 0.507 | search_plus_done; http://172.18.8.135:50800/match?q=GGTACTTGCCCAAGAGATGC&k=0&no_gap=0&offset=0&limit=50
0.638 | 0.122 | search_minus_done; http://172.18.8.135:50800/match?q=GCATCTCTTGGGCAAGTACC&k=0&no_gap=0&offset=0&limit=37
0.639 | 0.001 | cgi_end;

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