GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:22:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica oleracea var. viridis mRNA, clone: KALE-099A04, 3' end sequence.
DK552996.1:92-115
CTTTGGTGTTGTGTTGCTGAGCTGTTAACC92GGTAGAAAACCAATCGAACCAAGAAGATCATCTGGTGAAGGAAATTTAGTTGTT
46RDOAG_UP_023_F02_30DEC2004_006 O. Alba 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
EE531746.1:346-369
TTTGGTGTTGTGTTGCTTGAGCTGTTAACC346GGTAGAAAACCAATCGAACCAAGAAGATCATCTGGTGAAGGAAATTTAGTTGTT
BR057266 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-005D05 5', mRNA sequence.
EX072622.1:234-257
TTTGGTGTTGTGTTGCTTGAGCTGTTAACC234GGTAGAAAACCAATCGAACCAAGAAGATCATCTGGTGAAGGAAATTTAGTTGTT
Brassica rapa subsp. pekinensis male sterility linked AFLP marker P01SCR01 genomic sequence.
FJ851467.1:1-24
1GGTAGAAAACCAATCGAACCAAGAAGATCATCTGGTGAAGGAAATTTAGTTGTT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_22000.
FX695607.1:523-546
AACAACTAAATTTCCTTCACCAGATGATCT523TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_9489.
FX731655.1:557-580
AACAACTAAATTTCCTTCACCAGATGATCT557TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:51337888-51337911
AACAACTAAATTTCCTTCACCAGATGATCT51337888TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:14474034-14474057
AACAACTAAATTTCCTTCACCAGATGATCT14474034TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA
Brassica napus genome assembly, chromosome: A04.
HG994358.1:8896003-8896026
AACAACTAAATTTCCTTCACCAGATGATCT8896003TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:45206071-45206094
AACAACTAAATTTCCTTCACCAGATGATCT45206071TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA
Brassica rapa genome, scaffold: A04.
LR031576.1:8153870-8153893
AACAACTAAATTTCCTTCACCAGATGATCT8153870TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:44413067-44413090
AACAACTAAATTTCCTTCACCAGATGATCT44413067TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:8399544-8399567
AACAACTAAATTTCCTTCACCAGATGATCT8399544TCTTGGTTCGATTGGTTTTCTACCGGTTAACAGCTCAAGCAACACAACACCAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTAGAAAACCAATCGAACCAAGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTAGAAAACCAATCGAACCAAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.297 | 0.288 | search_plus_done; http://172.18.8.135:50400/match?q=GGTAGAAAACCAATCGAACCAAGA&k=0&no_gap=0&offset=0&limit=50
0.370 | 0.073 | search_minus_done; http://172.18.8.135:50400/match?q=TCTTGGTTCGATTGGTTTTCTACC&k=0&no_gap=0&offset=0&limit=46
0.376 | 0.006 | cgi_end;

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