GGGenome | Results

2025-04-06 06:15:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Sequence 14 from patent US 7557201.
GP469017.1:373-392

TATGCAGTCAATAGCTATTTCCAAAAGAAA373GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT

GA__Eb0041A15f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0041A15f, mRNA sequence.
BG447196.1:379-398

TATGCAGTCAATAGCTATTTCCAAAAGAAA379GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT

GR__Ea38J21.r GR__Ea Gossypium raimondii cDNA clone GR__Ea38J21 3', mRNA sequence.
CO077019.1:372-391

TATGCAGTCAATAGCTATTTCCAAAAGAAA372GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT

GR__Ea12F19.f GR__Ea Gossypium raimondii cDNA clone GR__Ea12F19 5', mRNA sequence.
CO091718.1:375-394

TATGCAGTCAATAGCTATTTCCAAAAGAAA375GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT

GR__Eb021M17.r GR__Eb Gossypium raimondii cDNA clone GR__Eb021M17 3', mRNA sequence.
CO119076.1:341-360

TATGCAGTCAATAGCTATTTCCAAAAGAAA341GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT

CM076H08 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR459497.1:320-339

TATGCAGTCAATAGCTATTTCCAAAAGAAA320GGTCAAGCTCAAGGAAGCTGTGATATTTCAGGCACTGCTACTGTTAGCGT

EST1059555 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT548915.1:370-389

TATGCAGTCAATAGCTATTTCCAAAAGAAA370GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT

EST1076794 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT566154.1:366-385

TATGCAGTCAATAGCTATTTCCAAAAGAAA366GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT

UFL_650_41 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES805324.1:198-217

TATGCAGTCAATAGCTATTTCCAAAAGAAA198GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT

UFL_648_06 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES807990.1:57-76

TATGCAGTCAATAGCTATTTCCAAAAGAAA57GGTCAAGCTCAAGGAAGCTGTGATTTTCAGGCACTGCTACTGTTAGCGTT

UFL_364_93 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES820514.1:342-361

TATGCAGTCAATAGCTATTTCCAAAAGAAA342GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT

UFL_340_28 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES823631.1:379-398

TATGCAGTCAATAGCTATTTCCAAAAGAAA379GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT

UFL_408_36 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES832073.1:371-390

TATGCAGTCAATAGCTATTTCCAAAAGAAA371GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT

UFL_462_44 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES832823.1:342-361

TATGCAGTCAATAGCTATTTCCAAAAGAAA342GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT

UFL_109_62 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES844332.1:379-398

TATGCAGTCAATAGCTATTTCCAAAAGAAA379GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT

sg018E06 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV494591.1:187-206

TATGCAGTCAATAGCTATTTCCAAAAGAAA187GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT

H02_F8_016 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX170427.1:434-453

TATGCAGTCAATAGCTATTTCCAAAAGAAA434GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT

E12-083E12 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK793741.1:304-323

TATGCAGTCAATAGCTATTTCCAAAAGAAA304GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT

A01-50A01 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK793884.1:443-462

TATGCAGTCAATAGCTATTTCCAAAAGAAA443GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT

ndcxf0_0016_G02.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ383866.1:393-412

TATGCAGTCAATAGCTATTTCCAAAAGAAA393GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT

ndcxf0_0020_B06.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ384163.1:393-412

TATGCAGTCAATAGCTATTTCCAAAAGAAA393GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT

ndcxf0_0032_A12.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ385067.1:391-410

TATGCAGTCAATAGCTATTTCCAAAAGAAA391GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT

ndcxf0_0037_F10.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ385415.1:385-404

TATGCAGTCAATAGCTATTTCCAAAAGAAA385GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT

Aeschynomene afraspera mRNA 5-prime sequence from clone ADL0ACA15YK20 (ADL0ACA15YK20CM1).
LO003523.1:418-437

TATGCAGTTAATAGCTATTTCCAGAGAAAG418GGTCAAGCTCAAGGAAGCTGTGATTTTGCTGGTTCTGCTGCTCCTACCCC

Gossypioides kirkii chromosome KI_12.
CP032254.1:8636355-8636374

TATGCAGTCAATAGCTATTTCCAAAAGAAA8636355GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT

Gossypium raimondii isolate D5-4 chromosome D5_12.
CP032564.1:11844330-11844349

TATGCAGTCAATAGCTATTTCCAAAAGAAA11844330GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT

Gossypium herbaceum isolate Zhongcao1 chromosome 12.
CP106691.1:13697123-13697142

TATGCAGTCAATAGCTATTTCCAAAAGAAA13697123GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGCGT

Gossypium rotundifolium isolate GPK201 chromosome 12.
CP106733.1:8335643-8335662

TATGCAGTCAATAGCTATTTCCAAAAGAAA8335643GGTCAAGCTCAAGGAAGCTGTGATTTTTCAGGCACTGCTACTGTTAGTGT

Sphaerochaeta coccoides DSM 17374, complete genome.
CP002659.1:303705-303724

TCCCATTGCCATCGGTTATGCGCACGACCA303705GGTCAAGCTCAAGGAAGCTGGCTCCCCCGTCGTAATCACGGCACCGAGCG

Gossypium turneri isolate D10-2 chromosome D10_12.
CP032582.1:42764743-42764762

ACACTAACAGTAGCAGTGCCTGAAAAATCA42764743CAGCTTCCTTGAGCTTGACCTTTCTTTTGGAAATAGCTATTGACTGCATA

Gossypium arboreum cultivar Shixiya1 chromosome 12.
CP053561.1:74410814-74410833

ACGCTAACAGTAGCAGTGCCTGAAAAATCA74410814CAGCTTCCTTGAGCTTGACCTTTCTTTTGGAAATAGCTATTGACTGCATA

Gossypium herbaceum isolate GPA1alz chromosome 12.
CP106705.1:96177662-96177681

ACGCTAACAGTAGCAGTGCCTGAAAAATCA96177662CAGCTTCCTTGAGCTTGACCTTTCTTTTGGAAATAGCTATTGACTGCATA

Gossypium bickii isolate GPG1lz chromosome 12.
CP106716.1:99740703-99740722

ACACTAACAGTAGCAGTGCCTGAAAAATCA99740703CAGCTTCCTTGAGCTTGACCTTTCTTTTGGAAATAGCTATTGACTGCATA

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
1.367 | 1.359 | search_plus_done; http://172.18.8.135:50400/match?q=GGTCAAGCTCAAGGAAGCTG&k=0&no_gap=0&offset=0&limit=50
1.419 | 0.052 | search_minus_done; http://172.18.8.135:50400/match?q=CAGCTTCCTTGAGCTTGACC&k=0&no_gap=0&offset=0&limit=21
1.422 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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