GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:10:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:27103664-27103684
TACGCAAACTTATACTAGGTGTAGATTAAG27103664GGTCACTCCGATAGCCATTTCATTTTAAGGTTTTAGTTTTCTTTTTCCGGT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:25317674-25317694
TACGCAAACTTTTACTAGGTGTAGATTAAG25317674GGTCACTCCGATAGCCATTTCATTTTAAGGTTATAGTTTTCTTTTACTGGT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:26943579-26943599
TACGCAAACTTATACTAGGTGTAGATTAAG26943579GGTCACTCCGATAGCCATTTCATTTTAAGGTTTTAGTTTTCTTTTTCCGGT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:26710139-26710159
GCGCTTTCTCTTCAATAGGTGTAGATTAAG26710139GGTCACTCCGATAGCCATTTCATTTTAGGGTTTTAGTTTTCTTTTACCGGT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:26800225-26800245
TATGAAAACTTTTACTAGGTGTAAATGAAG26800225GGTCACTCCGATAGCCATTTCATTTTCAGGTTTTAGTTTTCTTTTACCGGT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:25363990-25364010
TACGCAAACTTATACTAGGTGTAGATTAAG25363990GGTCACTCCGATAGCCATTTCATTTTAAGGTTTTAGTTTTCTTTTTCCGGT
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:23450814-23450834
TATGAAAACTTTTACTAGGTGTAAATGAAG23450814GGTCACTCCGATAGCCATTTCATTTTCAGGTTTTAGTTTTCTTTTACCGGT
Malus domestica genome assembly, chromosome: 1.
OU744542.1:27167219-27167239
TACGCAAACTTATACTAGGTGTAGATTAAG27167219GGTCACTCCGATAGCCATTTCATTTTAAGGTTTTAGTTTTCTTTTTCCGGT
Malus domestica genome assembly, chromosome: 1.
OU744953.1:26533085-26533105
TATGAAAACTTTTACTAGGTGTAAATGAAG26533085GGTCACTCCGATAGCCATTTCATTTTCAGGTTTTAGTTTTCTTTTACCGGT
Malus domestica genome assembly, chromosome: 1.
OU744991.1:23636716-23636736
GCGCTTTCTCTTCAATAGGTGTAGATTAAG23636716GGTCACTCCGATAGCCATTTCATTTTAGGGTTTTAGTTTTCTTTTACCGGT
Malus domestica genome assembly, chromosome: 1.
OU744991.1:23726802-23726822
TATGAAAACTTTTACTAGGTGTAAATGAAG23726802GGTCACTCCGATAGCCATTTCATTTTCAGGTTTTAGTTTTCTTTTACCGGT
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:6815270-6815290
ACCGGTAAAAGAAAACTAAAACCTGAAAAT6815270GAAATGGCTATCGGAGTGACCCTTCATTTACACCTAGTAAAAGTTTTCATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTCACTCCGATAGCCATTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTCACTCCGATAGCCATTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.115 | 0.106 | search_plus_done; http://172.18.8.135:50400/match?q=GGTCACTCCGATAGCCATTTC&k=0&no_gap=0&offset=0&limit=50
0.147 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=GAAATGGCTATCGGAGTGACC&k=0&no_gap=0&offset=0&limit=39
0.148 | 0.001 | cgi_end;

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