GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:15:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mdfrt3031J23_e8274.g1 Mdfrt Malus domestica cDNA 5', mRNA sequence.
GO559773.1:115-137
CATTCCACAAAAAATTTAATTACACAGTTG115GGTCATCACCCACTTAAAAACCAAAAAAACAAGTTGAAAATAGACAACCAAAA
Malus hybrid cultivar cultivar Flame chromosome 6.
CP141915.1:11161925-11161947
CATTCCACAAAAATTTTAATTACACAGTTG11161925GGTCATCACCCACTTAAAAACCATAAAAACAAGTTGAAAATAGACAACCAAAA
Malus hybrid cultivar cultivar Flame chromosome 6.
CP141932.1:11617747-11617769
CATTCCACAAAAAATTTAATTACACAGTTG11617747GGTCATCACCCACTTAAAAACCAAAAAAACAAGTTGAAAATAGACAACCAAAA
Malus hybrid cultivar cultivar Royalty chromosome 9.
CP141961.1:11028844-11028866
CATTCCACAAAAATTTTAATTACACAGTTG11028844GGTCATCACCCACTTAAAAACCATAAAAACAAGTCGAAACTAGACAACCAAAA
Malus hybrid cultivar cultivar Royalty chromosome 9.
CP141978.1:11008811-11008833
CATTCCACAAAAATTTTAATTACACAGTTG11008811GGTCATCACCCACTTAAAAACCATAAAAACAAGTCGAAACTAGACAACCAAAA
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH046_00124m, 5' end sequence.
AB450722.1:517-539
TTTTGGTTGTCTATTTTCAACTTGTTTTTA517TGGTTTTTAAGTGGGTGATGACCCAACTTGTGTAATTTAAAATTTTTCTGGGA
Mdfrs3138K16.g1 Apple_EST_Mdfrs Malus domestica cDNA 5', mRNA sequence.
GO520354.1:289-311
TTTTGGTTGTCTATTTTCAACTTGTTTTTT289TGGTTTTTAAGTGGGTGATGACCCAACTGTGTAATTA
Pyrus pyrifolia mRNA, clone: NFW1_01_57, 5' end sequence, expressed in flower bud.
HX761213.1:699-721
TTTTGGTTGTCTATTTTCAACTTGTTTTTA699TGGTTTTTAAGTGGGTGATGACCCAACTGTGTAATTAAAATTTTTCTGGAAT
TSA: Pyrus x bretschneideri Unigene66958_XinShao mRNA sequence.
JR653976.1:113-135
TTTTGGTTGTCTATTTTCAACTTGTTTTTA113TGGTTTTTAAGTGGGTGATGACCCAACTGTGTAATTAAAATTTTTCTGGAATG
Malus hybrid cultivar cultivar SH6 chromosome 6.
CP143363.1:23719384-23719406
TTTTGGTTGTCTATTTTCAACTTGTTTTTT23719384TGGTTTTTAAGTGGGTGATGACCCAACTGTGTAATTAAAATTTTTGTGGAATG
Malus hybrid cultivar cultivar SH6 chromosome 6.
CP143380.1:21339007-21339029
TTTTGGTTGTCTATTTTCAACTTGTTTTTA21339007TGGTTTTTAAGTGGGTGATGACCCAACTGTGTAATTAAAATTTTTGTGGAATG
Malus sylvestris genome assembly, chromosome: 6.
OU696508.1:23715079-23715101
TTTTGGTTGTCTATTTTCAACTTGTTTTTT23715079TGGTTTTTAAGTGGGTGATGACCCAACTGTGTAATTAAAATTTTTGTGGAATG
Malus domestica genome assembly, chromosome: 6.
OU696682.1:24006420-24006442
TTTTGGTTGTCTATTTTCAACTTGTTTTTT24006420TGGTTTTTAAGTGGGTGATGACCCAACTGTGTAATTAAAATTTTTGTGGAATG
Malus domestica genome assembly, chromosome: 6.
OU744547.1:23757770-23757792
TTTTGGTTGTCTATTTTCAACTTGTTTTTT23757770TGGTTTTTAAGTGGGTGATGACCCAACTGTGTAATTAAAATTTTTGTGGAATG
Malus domestica genome assembly, chromosome: 6.
OU744958.1:23718849-23718871
TTTTGGTTGTCTATTTTCAACTTGTTTTTT23718849TGGTTTTTAAGTGGGTGATGACCCAACTGTGTAATTAAATTTTTTGTGGAATG
Malus domestica genome assembly, chromosome: 6.
OU744996.1:19880265-19880287
TTTTGGTTGTCTATTTTCAACTTGTTTTTT19880265TGGTTTTTAAGTGGGTGATGACCCAACTGTGTAATTAAAATTTTTGTGGAATG
Malus x robusta genome assembly, chromosome: 14.
OY720338.1:19759060-19759082
TTTTGGTTGTCTATTTTCAACTTGTTTTTT19759060TGGTTTTTAAGTGGGTGATGACCCAACTGTGTAATTAAAATTTTTGTGGAATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTCATCACCCACTTAAAAACCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTCATCACCCACTTAAAAACCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.190 | 0.182 | search_plus_done; http://172.18.8.135:50400/match?q=GGTCATCACCCACTTAAAAACCA&k=0&no_gap=0&offset=0&limit=50
0.428 | 0.238 | search_minus_done; http://172.18.8.135:50400/match?q=TGGTTTTTAAGTGGGTGATGACC&k=0&no_gap=0&offset=0&limit=45
0.436 | 0.008 | cgi_end;

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