GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:17:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH004A06, complete sequence.
AC172870.1:40381-40402
TCTCTCATTCTTCGAACAAACTAAAAAAGA40381GGTGAATGGAATCTTGTCTTGATATTTCATTAAAAAAATTTAGGAACAAAAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117O12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189620.3:114316-114337
TTTTTGTTCCTAAATTTTTTTAATGAAATA114316TCAAGACAAGATTCCATTCACCTCTTTTTTAGTTTGTTCGAAGAATGAGAGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001F19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189625.2:14749-14770
TTTTTGTTCCTAAATTTTTTTAATGAAATA14749TCAAGACAAGATTCCATTCACCTCTTTTTTAGTTTGTTCGAAGAATGAGAGA
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:59263933-59263954
ATTTTTATTCCTAAATTTTTTTAATGAAAA59263933TCAAGACAAGATTCCATTCACCTCTTTTTTAGTTTGTTCGAAGAATGAGAGA
Brassica napus genome assembly, chromosome: A09.
HG994363.1:43126152-43126173
ATTTTTATTCCTAAATTTTTTTAATGAAAA43126152TCAAGACAAGATTCCATTCACCTCTTTTTTAGTTTGTTCGAAGAATGAGAGA
Brassica rapa genome, scaffold: A09.
LR031568.1:47442372-47442393
ATTTTTATTCCTAAATTTTTTTAATGAAAA47442372TCAAGACAAGATTCCATTCACCTCTTTTTTAGTTTGTTCGAAGAATGAGAGA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:57908987-57909008
ATTTTTATTCCTAAATTTTTTTAATGAAAA57908987TCAAGACAAGATTCCATTCACCTCTTTTTTAGTTTGTTCGAAGAATGAGAGA
Ennomos fuscantarius genome assembly, chromosome: 17.
HG992040.1:4732652-4732673
TATTAAAGAACTACGCTCAGACATGTCTGC4732652TCAAGACAAGATTCCATTCACCAATGATGAAATAGTGAATGAAATGTCTACT
Ennomos fuscantarius genome assembly, chromosome: 19.
HG992042.1:11378943-11378964
ACGGAACTAGGTTCAGTTATAAATCTATGC11378943TCAAGACAAGATTCCATTCACCAAACGATCAGTTGGTGAATGAAAACTCGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTGAATGGAATCTTGTCTTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTGAATGGAATCTTGTCTTGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.106 | 0.098 | search_plus_done; http://172.18.8.135:50400/match?q=GGTGAATGGAATCTTGTCTTGA&k=0&no_gap=0&offset=0&limit=50
0.146 | 0.040 | search_minus_done; http://172.18.8.135:50400/match?q=TCAAGACAAGATTCCATTCACC&k=0&no_gap=0&offset=0&limit=49
0.151 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).