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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:46:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Scophthalmus maximus chromosome 7.
CP026249.1:2208723-2208742
TGTGTGTGTGTGTCCACTCAGTGGGACATT2208723GGTGAGCAGCCATCTTCTTCAGTAGCATCCATCTGGTGTTTGGCCTGACA
Citrus unshiu mRNA, clone: SLG0996, 5'-end sequence, expressed in hypocotyl.
DC897558.1:86-105
GAAGGAATGTAGAGTTATGTGGTTGTTGTT86GGTGAGCAGCCATCTTCTTCTGAGAAGAAGAGGTTTAGATCTTGTTTCNT
Citrus sinensis genome assembly, chromosome: 3.
OY754320.1:3635023-3635042
GAAGGAATGTAGAGTTATGTGGTTGTTGTT3635023GGTGAGCAGCCATCTTCTTCTGAGAAGAAGAGGTTTAGATCTTGTTTCAT
Scophthalmus maximus genome assembly, chromosome: 4.
OY978255.1:25459009-25459028
TGTCAGGCCAAACACCAGATGGATGCTACT25459009GAAGAAGATGGCTGCTCACCAATGTCCCACTGAGTGGACACACACACACA
USDA-FP_119000-718 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_G11 5', mRNA sequence.
CF504229.1:172-191
ATGAAACAAGATCTAAACCTCTTCTTCTCA172GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTACATTCCTTC
CGF1004225_D04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_D04 5', mRNA sequence.
CK934906.1:179-198
ATGAAACAAGATCTAAACCTCTTCTTCTCA179GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTACATTCCTTC
UCRPT01_0009K13_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0009K13, mRNA sequence.
CV707323.1:74-93
ATGAAACAAGATCTAAACCTCTTCTTCTCA74GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTGCATTCCTTC
UCRPT01_0015I14_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0015I14, mRNA sequence.
CV711195.1:70-89
ATGAAACAAGATCTAAACCTCTTCTTCTCA70GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTGCATTCCTTC
Homo sapiens cDNA clone SMINT2005224, 5' end, mRNA sequence.
DA919929.1:9-28
AAGAAGCG9GAAGAAGATGGCTGCTCACCAGCTTTTTACCTGCACCTACTCAGCTATCT
Citrus tamurana mRNA, clone: SHA17D12_F1, 5'-end sequence, expressed in style.
DC897057.1:184-203
ATGAAACAAGATCTAAACCTCTTCTTCTCA184GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTACATTCCTTC
CSAH-PNP1246H02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246H02 5', mRNA sequence.
DR403840.1:125-144
ATGAAACAAGATCTAAACCTCTTCTTCTCA125GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTACATTCCTTC
IC0AAA38AD01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY274953.1:151-170
ATGAAACAAGATCTAAACCTCTTCTTCTCA151GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTACATTCCTTC
CS00-C1-100-025-H08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY651765.1:198-217
ATGAAACAAGATCTAAACCTCTTCTTCTCA198GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTACATTCCTTC
CS00-C1-100-128-G06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY658561.1:112-131
ATGAAACAAGATCTAAACCTCTTCTTCTCA112GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTACATTCCTTC
CS00-C1-650-037-A09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY682823.1:37-56
GTCCGACAAGATCTAAACCTCTTCTTCTCA37GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTACATTCCTTC
CS00-C3-700-038-B04-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY695586.1:54-73
CGTCCGTAACATCTAAACCTCTTCTTCTCA54GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTACATTCCTTC
CS00-C3-703-070-D08-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY726798.1:149-168
ATGAAACAAGATCTAAACCTCTTCTTCTCA149GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTACATTCCTTC
CS00-C3-704-048-C06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY731818.1:205-224
ATGAAACAAGATCTAAACCTCTTCTTCTCA205GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTACATTCCTTC
CS00-C3-704-058-B04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY733393.1:205-224
ATGAAACAAGATCTAAACCTCTTCTTCTCA205GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTACATTCCTTC
CR05-C1-103-050-H01-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY778930.1:124-143
ATGAAACAAGATCTAAACCTCTTCTTCTCA124GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTACATTCCTTC
CL06-C4-501-020-F01-CT.F Rangpur lime root, plant with hydric stress Citrus limonia cDNA, mRNA sequence.
EY873642.1:13-32
CTCTTCTTCTCA13GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTACATTCCTTC
IC0AAA38AD01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA38AD01, mRNA sequence.
FC905496.1:151-170
ATGAAACAAGATCTAAACCTCTTCTTCTCA151GAAGAAGATGGCTGCTCACCAACAACAACCACATAACTCTACATTCCTTC
Hedera helix genome assembly, chromosome: 2.
OX359265.1:38533709-38533728
ACCCATCAGCCCTTAAACCTCTTCTTCCCA38533709GAAGAAGATGGCTGCTCACCAACAAAACCCTCCATTTCTTTTAGACGCTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGTGAGCAGCCATCTTCTTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTGAGCAGCCATCTTCTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.254 | 0.245 | search_plus_done; http://172.18.8.135:50400/match?q=GGTGAGCAGCCATCTTCTTC&k=0&no_gap=0&offset=0&limit=50
2.374 | 2.120 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGAAGATGGCTGCTCACC&k=0&no_gap=0&offset=0&limit=47
2.387 | 0.013 | cgi_end;

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