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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 15:11:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GH_RMIRS_104_E12_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA sequence.
DW494859.1:75-94
AGAAGCAAGCTTGGCGGTCTCGGAGGATCC75GGTGAGCATCTGGACGACTTGCTTGAAAGAAGAAGTGTCGGCTTGGACGA
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF13O05, 3'-end sequence.
FY072919.1:636-655
CGAGTCTGGGGATCTCGGGGAGGAGCTTCC636GGTGAGCATCTGGACGACTTGTTTG
Elaeis guineensis EST, clone (6lib)_isotig31363.
LM625961.1:736-755
GGCGGCGGCTGCGGCGGTCTCGGCGGAGCC736GGTGAGCATCTGGACGACTTGCTTGAAGGAGGAGGTGTCGGCCTGGACGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_17234.
FX673058.1:547-566
CGAGTCCGGGGATCTCGGGGAGGAGCTTCC547GGTGAGCATCTGGACGACTTGTTTGAAAGAGGAAGTGTCTGCTTGGACAA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_18118.
FX688647.1:383-402
CGAGTCCGGGGATCTAGGGGAGGAGCTTCC383GGTGAGCATCTGGACGACTTGTTTGAAAGAGGAAGTGTCTGCTTGGACAA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_26324.
FX710818.1:389-408
CGAGTCTGGGGATCTCGGGGAGGAGCTTCC389GGTGAGCATCTGGACGACTTGTTTGAAAGAGGAAGTGTCTGCTTGGACAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_21618.
FX763688.1:445-464
CGAGTCCGGGGATCTCGGGGAGGAGCTTCC445GGTGAGCATCTGGACGACTTGCTTGAAAGAGGAAGTGTCTGCTTGGACAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_5071.
FX765636.1:252-271
CGAGTCTGGGGATCTCGGGGAGGAGCTTCC252GGTGAGCATCTGGACGACTTGTTTGAAAGAGGAAGTGTCTGCTTGGACAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_74035.
FX785023.1:162-181
CGAGTCCGGGGATCTCGGGGAGGAGCTTCC162GGTGAGCATCTGGACGACTTGTTTGAAAGAGGAAGTGTCTGCTTGGACAA
TSA: Chorispora bungeana CK_20190 mRNA sequence.
KA008257.1:608-627
CGAGTCAGGGGATCGAGGGGAAGAGGTTCC608GGTGAGCATCTGGACGACTTGTTTGAAAGAGGAAGTGTCTGCTTGAACGA
BOGQH67TR BOGQ Brassica oleracea genomic clone BOGQH67, genomic survey sequence.
BH590208.1:273-292
GTGGGTCGGGTTAGGCTTCTTGGAGGATCC273GGTGAGCATCTGGACGACTTGCTTGAAGGAGGAAGCATCGGTTTGGAAGA
SIR-72A1TF Sisymbrium irio BAC library SIR Sisymbrium irio genomic clone SIR-72A1, genomic survey sequence.
FI820825.1:396-415
AGAGTCCGGGGATCTCGGGGAGGAGCTTCC396GGTGAGCATCTGGACGACTTGTTTGAAAGAGGTAGTGTCTGCTTGAACGA
Lotus japonicus genomic DNA, clone: LjT04K19, TM2055.
AP009906.1:35389-35408
GGAGGCTTGTTTGGCGGTCTCGGTGGATCC35389GGTGAGCATCTGGACGACTTGCTTGAAGGAGGAGGTGTCGGCTTGGACGA
Lotus japonicus genomic DNA, chromosome 6, clone: LjT09E22, TM0508.
AP009998.1:99379-99398
GGAGGCTTGTTTGACGGTCTCGGTGGATCT99379GGTGAGCATCTGGACGACTTGCTTGAAGGAGGTGTCAGCTTGCACGAAGG
Brassica rapa subsp. pekinensis clone KBrH045H23, complete sequence.
FP340641.1:20661-20680
CGAGTCTGGGGATCTCGGGGAGGAGCTTCC20661GGTGAGCATCTGGACGACTTGTTTGAAAGAGGAAGTGTCTGCTTGGACAA
Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:15198900-15198919
GGAGGATTGCTTGACGGTCTCGGTGGATCC15198900GGTGAGCATCTGGACGACTTGCTTGAAGGAGGTGTCAGCTTGCACGAAGG
Lotus japonicus B-129 DNA, chromosome 2, complete sequence.
AP022630.1:7547490-7547509
GGAGGCTTGCTTGACGGTCTCGGTGGATCC7547490GGTGAGCATCTGGACGACTTGCCTGCAGTAATCAACCTTGTTCTTAATCG
Lotus japonicus B-129 DNA, chromosome 6, complete sequence.
AP022634.1:67637982-67638001
GGAGGCTTGTTTGACGGTCTCGGTGGATCT67637982GGTGAGCATCTGGACGACTTGCTTGAAGGAGGTGTCAGCTTGCACGAAGG
Linum usitatissimum chromosome Lu11.
CP027621.1:2703638-2703657
GGAGGCGTGCTTGGCGGTGTCGGGGGAGCC2703638GGTGAGCATCTGGACGACTTGCTTGAAAGTGGAAGTGTGGGCTTGGACGA
Linum usitatissimum chromosome Lu14.
CP027624.1:16960719-16960738
GGAGGCGTGCTTGGCGGTGTCGGGGGAGCC16960719GGTGAGCATCTGGACGACTTGCTTGAAAGTGGAAGTGTGGGCTTGGACGA
Gossypioides kirkii chromosome KI_05.
CP032247.1:11752032-11752051
AGAAGCGAGCTTGGCGGTCTCGGACGATCC11752032GGTGAGCATCTGGACGACTTGCTTGAAAGAAGAAGTGTCGGCTTGGACGA
Gossypium raimondii isolate D5-4 chromosome D5_05.
CP032557.1:13041062-13041081
AGAAGCGAGCTTGGCGGTCTCGGAGGATCC13041062GGTGAGCATCTGGACGACTTGCTTGAAAGAAGAAGTGTCGGCTTGGACGA
Gossypium herbaceum isolate Zhongcao1 chromosome 6.
CP106684.1:90630242-90630261
AGAAGCAAGCTTGGCGGTCTCGGAGGATCC90630242GGTGAGCATCTGGACGACTTGCTTGAAAGACGAAGTGTCGGCTTGGACGA
Gossypium herbaceum isolate GPA1alz chromosome 6.
CP106696.1:90699245-90699264
AGAAGCAAGCTTGGCGGTCTCGGAGGATCC90699245GGTGAGCATCTGGACGACTTGCTTGAAAGACGAAGTGTCGGCTTGGACGA
Gossypium herbaceum isolate GPA1alz chromosome 5.
CP106702.1:16371823-16371842
AGAAGCAAGCTTGGCGGTCTCGGAGGATCC16371823GGTGAGCATCTGGACGACTTGCTTGAAAGAAGAAGTGTCGGCTTGGACGA
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:65940347-65940366
GTGGGTCGGGTTAGGCTTCTTGGAGGATCC65940347GGTGAGCATCTGGACGACTTGCTTGAAGGAGGAAGCATCGGTTTGGAAGA
Canna indica chromosome 8.
CP136897.1:21829201-21829220
GGCGTGCTTCGCGGTGGTCTCTGCGGAGCC21829201GGTGAGCATCTGGACGACTTGCTTGAAGGACGAGGTGTCGGCATGGATGA
Brassica napus genome assembly, chromosome: A04.
HG994358.1:18379951-18379970
GTTGTTCGGGTTAGGCTTCTTGGAGGATCC18379951GGTGAGCATCTGGACGACTTGCTTGAAGGAGGAAGCATCGGTTTGGAAGA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:60178383-60178402
GTGGGTCGGGTTAGGCTTCTTGGAGGATCC60178383GGTGAGCATCTGGACGACTTGCTTGAAGGAGGAAGCATCGGTTTGGAAGA
Brassica rapa genome, scaffold: A04.
LR031576.1:17110897-17110916
GTGGGTCGGGTTAGGCTTCTTGGAGGATCC17110897GGTGAGCATCTGGACGACTTGCTTGAAGGAGGAAGCATCGGTTTGGAAGA
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:59655815-59655834
GTGGGTCGGGTTAGGCTTCTTGGAGGATCC59655815GGTGAGCATCTGGACGACTTGCTTGAAGGAGGAAGCATCGGTTTGGAAGA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:3923567-3923586
CGAGTCCGGGGATCTAGGGGAGGAGCTTCC3923567GGTGAGCATCTGGACGACTTGTTTGAAAGAGGAAGTGTCTGCTTGGACAA
Ananas comosus var. bracteatus genome assembly, chromosome: 24.
LR862152.1:766144-766163
GGCGTGCTTCCCGGCGGCCGCGGCGGAGCC766144GGTGAGCATCTGGACGACTTGTTTGAAGGACGCGGTGTCGGCCTGGATGA
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:17490527-17490546
GTGGGTCGGGTTAGGCTTCTTGGAGGATCC17490527GGTGAGCATCTGGACGACTTGCTTGAAGGAGGAAGCATCGGTTTGGAAGA
Polygonum aviculare genome assembly, chromosome: 9.
OW204031.1:28942702-28942721
AGTTGGTCTCTTAGAGGTCTCCGGCGAGCC28942702GGTGAGCATCTGGACGACTTGTTTGAAGGAGGAGGGGTCCGCGGTGACGA
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:6272570-6272589
CGAGTCCGGGGATCTCGGGGAGGAGCTTCC6272570GGTGAGCATCTGGACGACTTGTTTGAAAGAGGAAGTGTCTGCTTGGACAA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:3923567-3923586
CGAGTCCGGGGATCTAGGGGAGGAGCTTCC3923567GGTGAGCATCTGGACGACTTGTTTGAAAGAGGAAGTGTCTGCTTGGACAA
Cardamine flexuosa genome assembly, chromosome: 6.
OY743219.1:5160552-5160571
CGAGTCTGGTGATCTCGGGGAGGAGCTTCC5160552GGTGAGCATCTGGACGACTTGTTTGAAAGAGGAAGTGTCTGCTTGAACAA
Draba incana genome assembly, chromosome: 3.
OY755204.1:20475860-20475879
GCCGGGTTGGTGGGTCGGGTTGGAGAATCC20475860GGTGAGCATCTGGACGACTTGCTAAAAGGATGCAGCATCGGTTTGGATGA
Nasturtium officinale genome assembly, chromosome: 4.
OY978502.1:4279303-4279322
TGAGTCTGGAGATCTGGGTGAGGAGCTTCC4279303GGTGAGCATCTGGACGACTTGTTTGAAAGAGGAAGTGTCTGCTTGAACAA
Cardamine chenopodiifolia genome assembly, chromosome: 3.
OZ000461.1:5862942-5862961
CGAGTCTGGTGATCTCGGGGAGGAGCTTCC5862942GGTGAGCATCTGGACGACTTGTTTGAAAGAGGAAGTGTCTGCTTGAACAA
Cardamine chenopodiifolia genome assembly, chromosome: 28.
OZ000486.1:13978123-13978142
GTTATGATAATTGGGTTTCTTGGAGTATCC13978123GGTGAGCATCTGGACGACTTGTTTGAAGGAGTTAGTATCGGTGTGGATGA
Sequence 852 from patent US 11174491.
MY701011.1:282-301
TCGTCCAAGCCGACACTTCTTCTTTCAAGC282AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
GR__Ea25L07.r GR__Ea Gossypium raimondii cDNA clone GR__Ea25L07 3', mRNA sequence.
CO100368.1:245-264
TCGTCCAAGCCGACACTTCTTCTTTCAAGC245AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTCGCTTCT
EST1069910 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT559270.1:334-353
TCGTCCAAGCCGACACTTCTTCTTTCAAGC334AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
EST1074757 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT564117.1:336-355
TCGTCCAAGCCGACACTTCTTCTTTCAAGC336AAGTCGTCCAGATGCTCACCGGTTCCTCCGAGACCGCCAAGCTCGCTTCT
EST1074820 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT564180.1:4-23
AGC4AAGTCGTCCAGATGCTCACCGGTTCCTCCGAGACCGCCAAGCTCGCTTCT
EST1078774 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT568134.1:329-348
TCGTCCAAGCCGACACTTCTTCTTTCAAGC329AAGTCGTCCAGATGCTCACCGGTTCCTCCGAGACCGCCAAGCTCGCTTCT
EST1083217 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT572577.1:335-354
TCGTCCAAGCCGACACTTCTTCTTTCAAGC335AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
GH_HYPT_01-01-38R_F12_InvR_03May04_086_F Stem - 3 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW227785.1:237-256
TCGTCCAAGCCGACACTTCTTCTTTCAAGC237AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
GH_RMIRS_002_D07_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA sequence.
DW476330.1:99-118
TCGTCCAAGCCGACACTTCTTCTTTCAAGC99AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
TSA: Mesembryanthemum crystallinum mRNA, contig: Mcr013268.001.
FX916087.1:106-125
TCGTCCAAGCCGACACCACCTCCTTCAAGC106AAGTCGTCCAGATGCTCACCGGCGCCTCCGACAAGCCCGGCCCAGCCCAG
TSA: Raphanus sativus RS05647 mRNA sequence.
JT790194.1:52-71
TTGTCCAAGCAGACACTTCCTCTTTCAAAC52AAGTCGTCCAGATGCTCACCGGAAGCTCCTCCCCGAGATCCCCGGACTCG
TSA: Raphanus sativus RS05648 mRNA sequence.
JT790195.1:52-71
TTGTCCAAGCAGACACTTCCTCTTTCAAAC52AAGTCGTCCAGATGCTCACCGGAAGCTCCTCCCCGAGATCCCCGGACTCG
TSA: Chorispora bungeana T_43177 mRNA sequence.
KA080007.1:286-305
TCGTTCAAGCAGACACTTCCTCTTTCAAAC286AAGTCGTCCAGATGCTCACCGGAACCTCTTCCCCTCGATCCCCTGACTCG
UCDJRBES11539 Juglans regia HindIII library Juglans regia genomic clone JH033M16, genomic survey sequence.
HR194053.1:69-88
TCGTTCAAGCTGATACTTCCTCCTTCAAAC69AAGTCGTCCAGATGCTCACCGGATCCTCCGAAACCACCAAGCACGCCTCC
Lotus japonicus genomic DNA, chromosome 2, clone: LjB64M03, BM1183.
AP007875.2:69558-69577
CGATTAAGAACAAGGTTGATTACTGCAGGC69558AAGTCGTCCAGATGCTCACCGGATCCACCGAGACCGTCAAGCAAGCCTCC
Brassica rapa subsp. pekinensis clone KBrB035G14, complete sequence.
FP340612.1:81451-81470
TCTTCCAAACCGATGCTTCCTCCTTCAAGC81451AAGTCGTCCAGATGCTCACCGGATCCTCCAAGAAGCCTAACCCGACCCAC
Gossypium arboreum clone GM226J06-jme, complete sequence.
AC243102.1:115712-115731
TCGTCCAAGCCGACACTTCTTCTTTCAAGC115712AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:6859312-6859331
TCGTCCAAGCCGACACCTCCTCCTTCAAGC6859312AAGTCGTCCAGATGCTCACCGGATCCACCGAGACCGCCAAACAAGCCTCC
Gossypium raimondii isolate D5-4 chromosome D5_06.
CP032558.1:40939481-40939500
TCGTCCAAGCCGACACTTCGTCTTTCAAGC40939481AAGTCGTCCAGATGCTCACCGGATCTTCCGAGACCGCCAAGCTTGCTTCT
Gossypium turneri isolate D10-2 chromosome D10_05.
CP032575.1:47319932-47319951
TCGTCCAAGCCGACACTTCTTCTTTCAAGC47319932AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTCGCTTCT
Gossypium herbaceum isolate Zhongcao1 chromosome 5.
CP106692.1:80096472-80096491
TCGTCCAAGCCGACACTTCTTCTTTCAAGC80096472AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
Gossypium bickii isolate GPG1lz chromosome 13.
CP106709.1:131546896-131546915
TCGTCCAAGCCGACACTTCTTCTTTCAAGC131546896AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGTTCGCTTCT
Gossypium bickii isolate GPG1lz chromosome 6.
CP106714.1:23186376-23186395
TCGTCCAAGCCGACACTTCGTCTTTCAAGC23186376AAGTCGTCCAGATGCTCACCGGATCCTCCGAGACCGCCAAGCTTGCTTCT
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:188089238-188089257
TTCAGTCAAGGCGCTTCTTTTCTTTCAAGC188089238AAGTCGTCCAGATGCTCACCGCATCCTCCGAGACCGCCAAGCTCGCTTCT
Ananas comosus genome assembly, chromosome: 11.
LR828291.1:11687326-11687345
TCATCCAGGCCGACACCGCGTCCTTCAAAC11687326AAGTCGTCCAGATGCTCACCGGCTCCGCCGCGGCCGCCGGGAAGCACGCC
Arabidopsis arenosa genome assembly, chromosome: 8.
LR999458.1:9938562-9938581
TTGTTCAAGCAGACACTTCTACTTTCAAAC9938562AAGTCGTCCAGATGCTCACCGGCTCCTCCACCGATAACACCACCGGAAAA
Thlaspi arvense genome assembly, chromosome: 3.
OU466859.2:52150486-52150505
TCGTTCAAGCAGACACTAACTCTTTCAAAC52150486AAGTCGTCCAGATGCTCACCGGAAGCTCCTCCCCGAGATCCCCAGACTCG
Thlaspi arvense genome assembly, chromosome: 4.
OU466860.2:6601090-6601109
ACGTCTACACCGATACTTCCTCCTTCAAAC6601090AAGTCGTCCAGATGCTCACCGGATGCCACAATAACCCGACTCACCAACCC
Ailanthus altissima genome assembly, chromosome: 8.
OX327690.1:24475017-24475036
TCGTCCAAGCCGACACTTCCTCCTTCAAAC24475017AAGTCGTCCAGATGCTCACCGGATCCTCCGAAACCGCCAAGCTCGCTTCC
Ailanthus altissima genome assembly, chromosome: 29.
OX327711.1:18187827-18187846
TCGTCCAAGCCGACACTTCTTCCTTTAAAC18187827AAGTCGTCCAGATGCTCACCGGATCCTCCGAAACCGCCAAGCTCGCTTCC
Hibiscus tridactylites genome assembly, chromosome: 16.
OY288280.1:83716726-83716745
TCGTCCAAGCCGATACTTCATCTTTCAAGC83716726AAGTCGTCCAGATGCTCACCGGATCTTCCGAGACGGCCAAGCTAGCTTCT
Hibiscus tridactylites genome assembly, chromosome: 18.
OY288282.1:79744602-79744621
TCGTCCAAGCCGACACTTCATCTTTCAAGC79744602AAGTCGTCCAGATGCTCACCGGATCTTCCGAGACGGCCAAGCTAGCTTCT
Citrus sinensis genome assembly, chromosome: 2.
OY754319.1:29490615-29490634
TCGTCCAAGCAGACACCTCTTCCTTCAAAC29490615AAGTCGTCCAGATGCTCACCGGATCCTCTGAAACCGCTAAACAAGCATCC
Nasturtium officinale genome assembly, chromosome: 6.
OY978504.1:4903399-4903418
TCATCCACACCGATGTTAGCTCCTTCAAGC4903399AAGTCGTCCAGATGCTCACCGGATACTCCAAGAAACCCAATTATCATAAC
Cardamine chenopodiifolia genome assembly, chromosome: 11.
OZ000469.1:14717921-14717940
TTGTTCAAGCAGACGCTTCCTCTTTCAAAC14717921AAGTCGTCCAGATGCTCACCGGAAGCTCCTCCCCGAGATCTCCAGACTCA
Cardamine chenopodiifolia genome assembly, chromosome: 19.
OZ000477.1:3986773-3986792
TTGTTCAAGCAGACACTTCCTCTTTCAAAC3986773AAGTCGTCCAGATGCTCACCGGAAGCTCCTCCCCGAGATCTCCAGACTCA
Cardamine chenopodiifolia genome assembly, chromosome: 27.
OZ000485.1:14884444-14884463
TTGTTCAAGCAGACACTTCCTCTTTCAAAC14884444AAGTCGTCCAGATGCTCACCGGAAGCTCCTCCCCGAGATCTCCAGACTCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTGAGCATCTGGACGACTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTGAGCATCTGGACGACTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.391 | 0.382 | search_plus_done; http://172.18.8.135:50400/match?q=GGTGAGCATCTGGACGACTT&k=0&no_gap=0&offset=0&limit=50
0.899 | 0.507 | search_minus_done; http://172.18.8.135:50400/match?q=AAGTCGTCCAGATGCTCACC&k=0&no_gap=0&offset=0&limit=8
0.923 | 0.024 | cgi_end;

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