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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:11:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Onychomys torridus genome assembly, chromosome: 5.
LR877192.1:71006711-71006730
CCATGAGTTTATCATCTGATGGGCTGTTGG71006711GGTGATGGACACTTAGGAGGTGAGACTTAGCTAAAGGAGGCGGCCTTTGG
Heterocephalus glaber genome assembly, chromosome: 3.
OX090943.1:99488683-99488702
TGAGATCAGAATTTGATGGCATTACTGGGA99488683GGTGATGGACACTTAGGAGGTGGAGCCTAATTGAAGACAGTGGTCCAGGG
Onychomys arenicola genome assembly, chromosome: 5.
OX460351.1:72540335-72540354
CCATGAGTTTATCATCTGATGGGCTGTTGG72540335GGTGATGGACACTTAGGAGGTGAGACTTAGCTAAAGGAGGCGGCCTTTGG
Onychomys leucogaster genome assembly, chromosome: 5.
OX460375.1:72365548-72365567
CCATGAGTTTATCATCTGATGGGCTGTTGG72365548GGTGATGGACACTTAGGAGGTGAGACTTAGCTAAAGGAGGCGGCCTTTGG
Peromyscus eremicus genome assembly, chromosome: 5.
OX460398.1:63200298-63200317
ACATGAGTTCATAATCTGATGGGCTGTTGG63200298GGTGATGGACACTTAGGAGGTGGGACCTAGCTAAAGGAGGAGGCCTTTGA
Onychomys leucogaster genome assembly, chromosome: 5.
OX460422.1:72763677-72763696
CCATGAGTTTATCATCTGATGGGCTGTTGG72763677GGTGATGGACACTTAGGAGGTGAGACTTAGCTAAAGGAGGCGGCCTTTGG
Onychomys arenicola genome assembly, chromosome: 5.
OX460446.1:71056097-71056116
CCATGAGTTTATCATCTGATGGGCTGTTGG71056097GGTGATGGACACTTAGGAGGTGAGACTTAGCTAAAGGAGGCGGCCTTTGG
Peromyscus eremicus genome assembly, chromosome: 5.
OX460470.1:63854927-63854946
ACATGAGTTCATAATCTGATGGGCTGTTGG63854927GGTGATGGACACTTAGGAGGTGGGACCTAGCTAAAGGAGGAGGCCTTTGA
Onychomys torridus genome assembly, chromosome: 5.
OX460886.1:71006711-71006730
CCATGAGTTTATCATCTGATGGGCTGTTGG71006711GGTGATGGACACTTAGGAGGTGAGACTTAGCTAAAGGAGGCGGCCTTTGG
Heterocephalus glaber genome assembly, chromosome: 1.
OZ001066.1:100192957-100192976
TGAGATCAGAATTTGATGGCATTACTGGGA100192957GGTGATGGACACTTAGGAGGTGGAGCCTAATTGAAGACAGTGGTCCAGGG
Heterocephalus glaber genome assembly, chromosome: 1.
OZ001109.1:99587746-99587765
TGAGATCAGAATTTGATGGCATTACTGGGA99587746GGTGATGGACACTTAGGAGGTGGAGCCTAATTGAAGACAGTGGTCCAGGG
Heterocephalus glaber genome assembly, chromosome: 3.
OX090911.1:62838173-62838192
CCCTGGACCACTGTCTTCAATTAGGCTCCA62838173CCTCCTAAGTGTCCATCACCTCCCAGTAATGCCATCAAATTCTGATCTCA
Podarcis lilfordi genome assembly, chromosome: 5.
OX395130.1:39706286-39706305
GCTTGCGTAATGGGGGTTTCCTCCCTTCTC39706286CCTCCTAAGTGTCCATCACCCATAAATCCCTCAGGGGTATCAGGAGAACC
TSA: Cannabis sativa PK22905.1_1.CasaPuKu mRNA sequence.
JP449489.1:300-319
AACAACAACAACAACAACAATAACACTATT300CCTCCTAAGTGTCCATCACCTTTTGATGTCATTTTCAAGATGGGAGCTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGTGATGGACACTTAGGAGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTGATGGACACTTAGGAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.180 | 0.172 | search_plus_done; http://172.18.8.135:50400/match?q=GGTGATGGACACTTAGGAGG&k=0&no_gap=0&offset=0&limit=50
0.289 | 0.109 | search_minus_done; http://172.18.8.135:50400/match?q=CCTCCTAAGTGTCCATCACC&k=0&no_gap=0&offset=0&limit=39
0.292 | 0.002 | cgi_end;

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