GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 06:09:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pyrus x bretschneideri Unigene4111_XinShao mRNA sequence.
JR599415.1:641-664
TGTAACCAAATTTGTGAAACACAAGAGAAA641GGTGGATACTCACTCAGTTGGAAAACCCTAAAGAGATATGGAGGAGAGAGAAGA
TSA: Pyrus x bretschneideri Unigene4112_XinShao mRNA sequence.
JR599416.1:733-756
TGTAACCAAATTTGTGAAACACAAGAGAAA733GGTGGATACTCACTCAGTTGGAAAACCCTAAAGAGATATGGAGGAGAGAGAAGA
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH033_07682m, 5' end sequence.
AB450713.1:146-169
TCTCTCTCTCTCTCTCTCTCTCTGTAGGGT146TTTCCAACTGAGTGAGTATCCACCTTTCTCTTGTGTTTCACAAATTTGGTTACA
Pyrus pyrifolia mRNA, cultivar: Housui, clone: NFR1_14_82m, 5'-end sequence.
AB529444.1:146-169
TCTCTCTCTCTCTCTCTCTCTCTGTAGGGT146TTTCCAACTGAGTGAGTATCCACCTTTCTCTTGTGTTTCACAAATTTGGTTACA
Pyrus pyrifolia mRNA, clone: NFR1_14_82, 5' end sequence, expressed in fruit.
HX746816.1:8-31
GTAGGGT8TTTCCAACTGAGTGAGTATCCACCTTTCTCTTGTGTTTCACAAATTTGGTTACA
TSA: Pyrus pyrifolia mRNA, contig: contig_3719.
FX396473.1:7-30
TAGGGT7TTTCCAACTGAGTGAGTATCCACCTTTCTCTTGTTTTTCACATATTTGGTTACA
Pyrus pyrifolia var. culta PpMADS9-1 mRNA for MADS-box protein, complete cds.
AB623163.2:6-29
AGGGT6TTTCCAACTGAGTGAGTATCCACCTTTCTCTTGTGTTTCACAAATTTGGTTACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTGGATACTCACTCAGTTGGAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTGGATACTCACTCAGTTGGAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.122 | 0.113 | search_plus_done; http://172.18.8.135:50400/match?q=GGTGGATACTCACTCAGTTGGAAA&k=0&no_gap=0&offset=0&limit=50
0.223 | 0.101 | search_minus_done; http://172.18.8.135:50400/match?q=TTTCCAACTGAGTGAGTATCCACC&k=0&no_gap=0&offset=0&limit=48
0.226 | 0.003 | cgi_end;

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