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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:05:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

B06_ISUFM-P11 unfed adult salivary gland cDNA library ISUF Ixodes scapularis cDNA, mRNA sequence.
DN971324.1:252-269
CCAGGTCGCTCCGCGCCCCTCCGGATCTCT252GGTGGCTTTCGCGGACACGTGTTGTCGGCGCGGTGGCGAACAATCTAA
Brassica rapa subsp. pekinensis methylthioalkylmalate synthase (MAM3-2) gene, partial cds.
FJ376041.1:64-81
TGAAGAAGCGATCAAAGCGGGTGCAACCAC64GGTGGCTTTCGCGGACACGGTGGGGATCAACATGCCGCGAGAATACGG
Streptomyces autolyticus strain CGMCC0516 chromosome, complete sequence.
CP019458.1:9866454-9866471
TCGGCATCGACCAGGGCGAGGACGTCGCGA9866454GGTGGCTTTCGCGGACACTGGGCGCGCCGAGCAGGCTGGTGCGGGTGC
Streptomyces malaysiensis DSM4137 chromosome, complete sequence.
CP023992.1:9124702-9124719
TCGGCATCGACCAGGGCGAGGACGTCGCGA9124702GGTGGCTTTCGCGGACACTGGGCGCGCCGAGCAGGCTGGTGCGGGTGC
Streptomyces sp. NBC_00564 strain NBC 00564 chromosome, complete genome.
CP107786.1:4827982-4827999
CGTTCCGAGGGTGATATGTCCGTCGCTGAC4827982GGTGGCTTTCGCGGACACGTCGTTGCAGCCGAGGTGGCCGGAAACCGT
Streptomyces sp. NBC_00658 chromosome, complete genome.
CP109032.1:5086717-5086734
GGTTCCGAGGGTGATATGTCCGTCGCTGAC5086717GGTGGCTTTCGCGGACACGTCGTTGCAGCCGAGGTGGCCGGAAACCGT
Megachile ligniseca genome assembly, chromosome: 5.
OX243781.1:2072820-2072837
ATTAAACTCTTAGGAACGACGCACCACTAT2072820GGTGGCTTTCGCGGACACCATTTCTCAGTACGGCGGTCGATTATAGTG
G893P57RM16.T0 Ixodes scapularis Pooled Non-infected Standard Library Ixodes scapularis cDNA, mRNA sequence.
EW785320.1:322-339
TTACACTGTTCACCATCGCGCCGACAACAC322GTGTCCGCGAAAGCCACCAGAGACGCGGAGGGGCGCGGAGCGACCTGG
KBrH121C04 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT013275.1:932-949
CCGTATTCTCGCGGCATGTTGATCCCCACC932GTGTCCGCGAAAGCCACCGTGGTTGCACCCGCTTTGATCGCTTCTTCA
Mycolicibacterium boenickei JCM 15653 DNA, complete genome.
AP022579.1:1112636-1112653
TTCCGCCGCCGTTTTCCACGCCACGGCTGT1112636GTGTCCGCGAAAGCCACCGCCCTCCGGTAGAAAGCGGCGAGCGCCGGC
Streptomyces sp. M56.
CP025018.1:1698345-1698362
GCACCCGCACCAGCCTGCTCGGCGCGCCCA1698345GTGTCCGCGAAAGCCACCTCGCGACGTCCTCGCCCTGGTCGATGCCGA
Streptomyces malaysiensis strain DSM 4137 chromosome, complete genome.
CP029823.1:1569830-1569847
GCACCCGCACCAGCCTGCTCGGCGCGCCCA1569830GTGTCCGCGAAAGCCACCTCGCGACGTCCTCGCCCTGGTCGATGCCGA
Mycolicibacterium boenickei strain DSM 44677 chromosome, complete genome.
CP060016.1:6348899-6348916
TTCCGCCGCCGTTTTCCACGCCACGGCTGT6348899GTGTCCGCGAAAGCCACCGCCCTCCGGTAGAAAGCGGCGAGCGCCGGC
Streptomyces sp. NBC_00554 strain NBC 00554 chromosome, complete genome.
CP107799.1:5280396-5280413
ACGGTTTCCGGCCACCTCGGCTGCAACGAC5280396GTGTCCGCGAAAGCCACCGTCAGCGACGGACATATCACCCTCGGAACG
Streptomyces sp. NBC_00243 chromosome.
CP108094.1:5529484-5529501
ACGGTTTCCGGCCACCTCGGCTGCAACGAC5529484GTGTCCGCGAAAGCCACCGTCAGCGACGGACATATCACCCTCGGAACC
Streptomyces sp. NBC_00035 chromosome, complete genome.
CP108291.1:5279622-5279639
ACGGTTTCCGGCCACCTCGGCTGCAACGAC5279622GTGTCCGCGAAAGCCACCGTCAGCGACGGACATATCACCCTCGGAACC
Streptomyces sp. NBC_01356 chromosome, complete genome.
CP108350.1:5234298-5234315
ACGGTTTCCGGCCATCTCGGCTGCAACGAC5234298GTGTCCGCGAAAGCCACCGTCAGCGACGGACATATCACCCTCGGAACC
Streptomyces sp. NBC_00827 chromosome, complete genome.
CP108872.1:4431046-4431063
ACGGTTTCCGGCCACCTCGGCTGCAACGAC4431046GTGTCCGCGAAAGCCACCGTCAGCGACGGACATATCACCCTCGGAACG
Streptomyces sp. NA07423 chromosome, complete genome.
CP126066.1:1679829-1679846
GCACCCGCACCAGCCTGCTCGGCGCGCCCA1679829GTGTCCGCGAAAGCCACCTCGCGACGTCCTCGCCCTGGTCGATGCCGA
Streptomyces sp. NBC_00828 chromosome, complete genome.
CP130727.1:5250367-5250384
ACGGTTTCCGGCCACCTCGGCTGCAACGAC5250367GTGTCCGCGAAAGCCACCGTCAGCGACGGACATATCACCCTCGGAACG
Streptomyces malaysiensis strain NA3722 chromosome, complete genome.
CP137895.1:1434151-1434168
GCACCCGCACCAGCCTGCTCGGCGCGCCCA1434151GTGTCCGCGAAAGCCACCTCGCGACGTCCTCGCCCTGGTCGATGCCGA
Ixodes scapularis clone 01_I19_T7 tandem repeat region.
GU318803.1:469-486
TTACACTGTTCGCCACCGCGCCAACAACAC469GTGTCCGCGAAAGCCACCAGAGACGCGGAGGGGCGCGGAGCGACCTGG
Agonopterix subpropinquella genome assembly, chromosome: 14.
OV277707.1:13136446-13136463
TTTTTAAACTCGCCGCTACTCGCTACTGCA13136446GTGTCCGCGAAAGCCACCAGTGGCTGTGGCCGGTGCGGTGGCTCGTTT
Pelosia muscerda genome assembly, chromosome: 16.
OY829114.1:14537414-14537431
GGTCGACACAAAGGATCCAATAGGGTCGAA14537414GTGTCCGCGAAAGCCACCTTGATAGAGGGGACTATACCTTCTCTAACC
Pelosia muscerda genome assembly, chromosome: 16.
OY829114.1:14537693-14537710
GGTCGACACAAAGGATCCAATAGGGTCGAA14537693GTGTCCGCGAAAGCCACCTTGATAGAGGGGATTATACCTCCTCTAACC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGTGGCTTTCGCGGACAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTGGCTTTCGCGGACAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.238 | 0.229 | search_plus_done; http://172.18.8.135:50400/match?q=GGTGGCTTTCGCGGACAC&k=0&no_gap=0&offset=0&limit=50
0.465 | 0.227 | search_minus_done; http://172.18.8.135:50400/match?q=GTGTCCGCGAAAGCCACC&k=0&no_gap=0&offset=0&limit=43
0.477 | 0.012 | cgi_end;

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