GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:16:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Myotis daubentonii genome assembly, chromosome: 15.
OY725374.1:57622684-57622703
TGGGCGACTGCGTAGGAGAGAAGGGGAGGA57622684GGTGGGTTTCAGGTAAGAGGACCATACCTGTGTCTGGATGTTTTTCTTTG
TSA: Pyrus pyrifolia mRNA, contig: contig_21582.
FX401684.1:423-442
GGGGGAGAGAGCAGTAGTGATCAGAGTTAT423GGTGGGTTTCAGGTAAGAGGCCGTCGGTGGGTAACCAAAGACTGAAGAAA
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:19661522-19661541
GGCGGAGAGAGCAGTAGTGATCAGAGTTAT19661522GGTGGGTTTCAGGTAAGAGGCCGTCGGTGGGTGACCAAAGACTGAAGAAA
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:20463019-20463038
GGTGGAGAGAGCAGTAGTGATCAGAGTTAT20463019GGTGGGTTTCAGGTAAGAGGCTGTCGGTGGGTAACCAGAGACTGAACAAA
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:19384776-19384795
GGCGGAGAGAGCAGTAGTGATCAGAGTTAT19384776GGTGGGTTTCAGGTAAGAGGCCGTCGGTGGGTAACCAAAGACTGAAGAAA
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:20722443-20722462
GGTGGAGAGAGCAGTAGTGATCAGAGTTAT20722443GGTGGGTTTCAGGTAAGAGGCTGTCGGTGGGTAACCAGAGACTGAACAAA
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:20653712-20653731
GGCGGAGAGAGCAGTAGTGATCAGAGTTAT20653712GGTGGGTTTCAGGTAAGAGGCCATCGGTGGGTAACCAAAGACTGAAGAAA
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:15719395-15719414
GGCGGAGAGAGCAGTAGTGATCAGAGTTAT15719395GGTGGGTTTCAGGTAAGAGGCCGTCGGTGGGTAACCAAAGACTGAAGAAA
Onychomys arenicola genome assembly, chromosome: X.
OX460370.1:151917276-151917295
CCAGTTACAGTCTTTAAGGCAATGTCTGGC151917276CCTCTTACCTGAAACCCACCACTCCACTCTTGGAGCTGGATTCCTACTGT
Onychomys leucogaster genome assembly, chromosome: X.
OX460441.1:123463784-123463803
CCAGTTACAGTCTTTAAGGCAATGTCTGGC123463784CCTCTTACCTGAAACCCACCACTGCACCCTTGGAGCTGGATTCCTACTGT
Onychomys arenicola genome assembly, chromosome: X.
OX460465.1:143326783-143326802
CCAGTTACAGTCTTTAAGGCAATGTCTGGC143326783CCTCTTACCTGAAACCCACCACTCCACTCTTGGAGCTGGATTCCTACTGT
Mdfwg2105B03_e21912.g1 Apple_EST_Mdfwg Malus domestica cDNA 5' similar to pir|T05664 hypothetical protein F22I13.130 - Arabidopsis thaliana emb|CAB37492.1| putative protein [Arabidopsis thaliana] emb|
GO558298.1:363-382
TTTCATCAGTCTTTGGTTACCCACCGACGG363CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCACC
TSA: Pyrus communis mRNA, contig: lc19034.
FX627566.1:351-370
TTTCTTCAGTCTTTGGTTACCCACCGACGG351CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCGCC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:26355902-26355921
TTTCATCAGTCTTTGGTTACCCACCGACGG26355902CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCACC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:24240627-24240646
TTTCTTCAGTCTTTGGTTACCCACCGACGG24240627CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCACC
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:25713745-25713764
TTTCTTCAGTCTCTGGTTACCCACCGACGG25713745CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCACC
Malus domestica genome assembly, chromosome: 5.
OU696681.1:25043595-25043614
TTTCTTCAGTCTTTGGTCACCCACCGACGG25043595CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCGCC
Malus domestica genome assembly, chromosome: 5.
OU744546.1:25652423-25652442
TTTCATCAGTCTTTGGTTACCCACCGACGG25652423CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCACC
Malus domestica genome assembly, chromosome: 5.
OU744957.1:25812665-25812684
TTTCATCAGTCTTTGGTTACCCACCGACGG25812665CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCACC
Malus domestica genome assembly, chromosome: 5.
OU744995.1:26911632-26911651
TTTCTTCAGTCTTTGGTCACCCACCGACGG26911632CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCGCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTGGGTTTCAGGTAAGAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTGGGTTTCAGGTAAGAGG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.102 | 0.094 | search_plus_done; http://172.18.8.135:50400/match?q=GGTGGGTTTCAGGTAAGAGG&k=0&no_gap=0&offset=0&limit=50
0.209 | 0.107 | search_minus_done; http://172.18.8.135:50400/match?q=CCTCTTACCTGAAACCCACC&k=0&no_gap=0&offset=0&limit=42
0.216 | 0.008 | cgi_end;

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