GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 07:25:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Cannabis sativa PK13484.1_1.CasaPuKu mRNA sequence.
JP450148.1:151-170
ACAATAGTCATAACAAGAAGTAGTGGTGAT151GGTGGTGGAAACGGTAGTAGAGAAACCTCATCGAGTAATTGGCAAACATC
Metellina segmentata genome assembly, chromosome: 1.
OX375873.1:44602644-44602663
CATGTCTTAGTCTTTGTTTTGGCGAATGTT44602644GGTGGTGGAAACGGTAGTAGTAGAACTAGTATAAATATTCTCTGCAACAA
Octopus vulgaris genome assembly, chromosome: 1.
OX597814.1:32447794-32447813
AGTAGCTGTAATAGTAATAATAGTAGTAGT32447794GGTGGTGGAAACGGTAGTAGTAATAGTGAAAGTGTAGTAATCAGCAGCAG
Octopus vulgaris genome assembly, chromosome: 21.
OX597834.1:45915866-45915885
TTTGTTTTTGATATCACTAGTTGGAGCAGC45915866GGTGGTGGAAACGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
Crioceris asparagi genome assembly, chromosome: 1.
OY293826.1:11984209-11984228
ATTGACCTGACAATTGGTCGTCTTTTGTCA11984209CTACTACCGTTTCCACCACCACCGCCTTCAATGCAAGTCAAATCGTCCAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTGGTGGAAACGGTAGTAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTGGTGGAAACGGTAGTAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.115 | 0.107 | search_plus_done; http://172.18.8.135:50400/match?q=GGTGGTGGAAACGGTAGTAG&k=0&no_gap=0&offset=0&limit=50
0.142 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=CTACTACCGTTTCCACCACC&k=0&no_gap=0&offset=0&limit=46
0.143 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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