GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 15:03:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

TSA: Humulus lupulus var. lupulus mRNA, contig: comp279230_c2_seq1.
LA387660.1:171-190
GGGACAAGGCAGGCCCACGGTGGATGGGAA171GGTGTTTGGGCCTATTTCCTTAGCTTTTCTCTCAAAAATACCACTTTTCC
Sambucus nigra genome assembly, chromosome: 7.
OX422213.1:281212597-281212616
GTTCCTAAAAGTTACATTGGTCCCGTACAA281212597GGTGTTTGGGCCTATTTCCTGGTCGTTTGATGGTTGTTTTGGGTTTTCTC
Rana temporaria genome assembly, chromosome: 1.
LR991680.1:452473099-452473118
AAATAAACACCAAAAATAGCCAACACACCT452473099AGGAAATAGGCCCAAACACCAGCAGCTGCTACAAATATATCAAAATTCTT
Humulus lupulus genome assembly, chromosome: 1.
OY720647.1:147827007-147827026
AGAAAAGTGGTATTTTTTAGAGAAAAGCTA147827007AGGAAATAGGCCCAAACACCAGCCCAGGCCCACACCCGAAGTAGCTCCAC
Humulus lupulus genome assembly, chromosome: 3.
OY720649.1:169506453-169506472
AGAAAAGTGGTATTTTTGAGAGAAAAGCTT169506453AGGAAATAGGCCCAAACACCAGCCCAGGCCCACGCCCGGATCCAGCCCAA
Humulus lupulus genome assembly, chromosome: 3.
OY720649.1:169510654-169510673
AGAAAAGTGGTATTTTTGAGAGAAAAGCTT169510654AGGAAATAGGCCCAAACACCGGCCCAGGCCCACGCCCGGATCCAGCCCAG
Humulus lupulus genome assembly, chromosome: X.
OY720650.1:47012857-47012876
AGAAAAGTGGTATTTTTTAGAGAAAAGCTA47012857AGGAAATAGGCCCAAACACCTTCCCAGCCACCGTTGGCCTGCCTTGTCCC
Humulus lupulus genome assembly, chromosome: 4.
OY720651.1:1751254-1751273
AGAAAAGTTGTATTTTTTAGGGAAAAGCTA1751254AGGAAATAGGCCCAAACACCTTCCCAGCCGCCTGCTTCAGCAGCTCCCCA
Humulus lupulus genome assembly, chromosome: 4.
OY720651.1:39275809-39275828
AGAAAAGTGGTATTTTTGGGAGAAAAGCTA39275809AGGAAATAGGCCCAAACACCAGCCCAGGCCCACGGTTGGATCCAGCCCAG
Humulus lupulus genome assembly, chromosome: 9.
OY720656.1:167972034-167972053
GGAAAAGTGGTATTTTTGAGAGAAAAGCTA167972034AGGAAATAGGCCCAAACACCTTCCCATCCACCGTGGGCCTGCCTTGTCCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGTGTTTGGGCCTATTTCCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTGTTTGGGCCTATTTCCT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.187 | 0.178 | search_plus_done; http://172.18.8.135:50400/match?q=GGTGTTTGGGCCTATTTCCT&k=0&no_gap=0&offset=0&limit=50
0.269 | 0.082 | search_minus_done; http://172.18.8.135:50400/match?q=AGGAAATAGGCCCAAACACC&k=0&no_gap=0&offset=0&limit=48
0.275 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).