GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 07:14:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RR4DK82TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY922908.1:351-372
ATTTGTAGAGATTTTGTAACATAAGCAGAC351GGTTCAGATTCGGTTTCAGCATCCTTTAGAAACATGTGTGAGATTTTTTCTT
TSA: Raphanus sativus RS22780 mRNA sequence.
JT807327.1:1434-1455
TTTGTAGAGATTTGTGTAACATAAGCAGAC1434GGTTCAGATTCGGTTTCAGCATCCTTTAGAAACATGTGAGATTTTTTCTTGG
RS2CO21JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX900768.1:174-195
AAGAAAAAATCTCACACATGTTTCTAAAGG174ATGCTGAAACCGAATCTGAACCGTCTGCTTATGTTACAAAATCTCTACAAAT
RR4DK82JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY918782.1:177-198
AAGAAAAAATCTCACACATGTTTCTAAAGG177ATGCTGAAACCGAATCTGAACCGTCTGCTTATGTTACAAAATCTCTACAAAT
RS3FX95JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD950740.1:193-214
AAGAAAAAATCTCACACATGTTTCTAAAGG193ATGCTGAAACCGAATCTGAACCGTCTGCTTATGTTACACAAATCTCTACAAA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_8968.
FX662500.1:114-135
AAGAAAAAATCTCACACATGTTTCTAAAGG114ATGCTGAAACCGAATCTGAACCGTCTGCTTATGTTACACAAATCTCTACAAA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:14340887-14340908
AAGAAAAAATCTCACACATGTTTCTAAAGG14340887ATGCTGAAACCGAATCTGAACCGTCTGCTTATGTTACACAAATCTCTACAAA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:14340887-14340908
AAGAAAAAATCTCACACATGTTTCTAAAGG14340887ATGCTGAAACCGAATCTGAACCGTCTGCTTATGTTACACAAATCTCTACAAA
Pseudomonas sp. T1-3-2 plasmid p1, complete sequence.
CP093281.1:229631-229652
TGACACTGCATCCTCGGGCATGACTGGGTT229631ATGCTGAAACCGAATCTGAACCCTCAAGGAGAAACGGGAATGCCAGAGATCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTTCAGATTCGGTTTCAGCAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTTCAGATTCGGTTTCAGCAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.185 | 0.176 | search_plus_done; http://172.18.8.135:50400/match?q=GGTTCAGATTCGGTTTCAGCAT&k=0&no_gap=0&offset=0&limit=50
0.428 | 0.243 | search_minus_done; http://172.18.8.135:50400/match?q=ATGCTGAAACCGAATCTGAACC&k=0&no_gap=0&offset=0&limit=48
0.432 | 0.005 | cgi_end;

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