GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:27:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Rana temporaria genome assembly, chromosome: 3.
LR991682.1:72499635-72499654
TAGGTATAGTTTTTCCTCTGTGTTAAAACT72499635GGTTCATTTCCCATTCATCGTGTATTGCTCATTCATGCAAAAGAAGGCCC
USDA-FP_119000-361 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_G06 5', mRNA sequence.
CF503874.1:4-23
GTT4GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
USDA-FP_120000-214 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-21_A06 5', mRNA sequence.
CF504724.1:3-22
TT3GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
USDA-FP_121000-326 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-36_G08 5', mRNA sequence.
CF505831.1:8-27
AGCTGTT8GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
USDA-FP_122000-825 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-56_C08 5', mRNA sequence.
CF507324.1:9-28
CAGCTGTT9GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
USDA-FP_124000-435 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-72_E03 5', mRNA sequence.
CF508932.1:9-28
CAGCTGTT9GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
UCRCR01_05N22_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa05N22, mRNA sequence.
CF831150.1:6-25
GTGTT6GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
CGF1004553_B02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_B02 5', mRNA sequence.
CK935665.1:5-24
GGGG5GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
UCRCS05_0003O17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003O17, mRNA sequence.
CN187088.1:5-24
GCAG5GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
UCRCS06_0006N18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006N18, mRNA sequence.
CN192418.1:9-28
GAGGTGTT9GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
C04016D03SK FlavFr1 Citrus clementina cDNA clone C04016D03, mRNA sequence.
CX292495.1:2-21
T2GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
C06009C02SK FlavCurFr1 Citrus clementina x Citrus tangerina cDNA clone C06009C02, mRNA sequence.
CX298159.1:8-27
GAGGGTT8GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
C07004F04SK SaltLeaf1 Citrus clementina cDNA clone C07004F04, mRNA sequence.
CX299974.1:11-30
AGCAGCTGTT11GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
Citrus unshiu mRNA, clone: ANT2_0054, 5'-end sequence, expressed in anther.
DC884069.1:25-44
GATAGCAAAGTCGTAGCAGCTGTT25GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
Citrus unshiu mRNA, clone: BFC5D70, 5'-end sequence, expressed in flavedo.
DC886519.1:8-27
GGCTGTT8GGTTCATTTCCCATTCATCGAACAGGTCGATCACNTCCTCCACTGTTTCT
KN0AAA2AB12ZM1 AbsAOv1 Citrus clementina cDNA 5', mRNA sequence.
DY256763.1:7-26
GCGGGG7GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
KN0AAN1AA05RM1 EHR (Terol) Citrus sinensis x Citrus trifoliata cDNA 5', mRNA sequence.
DY258915.1:5-24
GGTT5GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
IC0AAA22AH05RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY267714.1:6-25
CTGTT6GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
CS00-C1-100-034-A04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY652504.1:44-63
CACGCGTCCGCCCACGCGTCCGCAGCTGTT44GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
CS00-C1-100-038-A03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY652863.1:36-55
GACCCACGCGTCCGAGCCGTAGCAGTTGTC36GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
CS00-C1-100-069-A08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY654934.1:16-35
CCACGCGTCCGTGTT16GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
CS00-C3-701-063-G06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY707000.1:22-41
CCACGCGTCCGAGCAGCTGTT22GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
CS00-C3-703-076-C03-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY724456.1:19-38
CACGCGTCCGCAGCTGTT19GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
CS12-C1-001-023-H08-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
EY755091.1:15-34
CCACGCGTCCGGTT15GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
CS13-C1-001-022-B12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
EY757340.1:11-30
CCACGCGTCC11GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
CR05-C1-100-034-A08-CT.F Mandarin leaf, greenhouse plant Citrus reticulata cDNA, mRNA sequence.
EY760953.1:34-53
CGCGTCCGCCCACGCGTCCGAGCAGCTGTT34GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
CR05-C3-702-039-F08-CT.F Mandarin fruit, development stadium (3 of 3) Citrus reticulata cDNA, mRNA sequence.
EY805435.1:53-72
ATATTAGGTAGTAAAGCCGTAGCAGCTGTT53GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
CR05-C3-702-073-F03-CT.F Mandarin fruit, development stadium (3 of 3) Citrus reticulata cDNA, mRNA sequence.
EY806173.1:18-37
CCACGCGTCCGGCTGTT18GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
CR05-C3-702-065-A05-CT.F Mandarin fruit, development stadium (3 of 3) Citrus reticulata cDNA, mRNA sequence.
EY806513.1:18-37
CCACGCGTCCGGCTGTT18GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
CA26-C1-002-099-C10-CT.F Sour orange leaf, field plant Citrus aurantium cDNA, mRNA sequence.
EY850339.1:19-38
CCACGCGTCCGAGCTGTT19GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
CM30-C1-401-020-E07-CT.F Sweet lime leaf, infected with CiLV Citrus limettioides cDNA, mRNA sequence.
EY859906.1:24-43
CCCACGCGTCCGCCCACGCGTCC24GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
KN0AAA2AB12ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2AB12, mRNA sequence.
FC870568.1:7-26
GCGGGG7GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
KN0AAN1AA05RM1 EHR Citrus clementina cDNA clone KN0AAN1AA05, mRNA sequence.
FC876540.1:12-31
GCACGAGGGTT12GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
IC0AAA22AH05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22AH05, mRNA sequence.
FC901445.1:6-25
CTGTT6GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
362 'Cara cara' navel orange fruit cDNA library Citrus sinensis cDNA clone 492 5', mRNA sequence.
GO241714.1:1-20
1GGTTCATTTCCCATTCATCGAACAGGTCGATCACCTCCTCCACTGTTTCT
UCRCR01_05N22_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa05N22, mRNA sequence.
CF831149.1:736-755
AGAAACAGTGGAGGAGGTGATCGACCTGTT736CGATGAATGGGAAATGAACCAACACCTCGTGCG
C21 'BH' (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5', mRNA sequence.
GE213158.1:505-524
AGAAACAGTGGAGGAGGTGATCGACCTGTT505CGATGAATGGGAAATGAACCAACAGCTGCACCTCGGCCGCGACCACGCTA
Citrus sinensis genome assembly, chromosome: 6.
OY754323.1:7757010-7757029
AGAAACAGTGGAGGAGGTGATCGACCTGTT7757010CGATGAATGGGAAATGAACCAACAGCTGCTACGGCTTTACTACCTAATAT
Fragum fragum genome assembly, chromosome: 5.
OX336369.1:22460210-22460229
TTAGCGGCCTATTTACTGAGCCCATTACAG22460210CGATGAATGGGAAATGAACCTAAATGCAAGTGAGTGTCATCTAACGTGAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGTTCATTTCCCATTCATCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTTCATTTCCCATTCATCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.045 | 2.036 | search_plus_done; http://172.18.8.135:50400/match?q=GGTTCATTTCCCATTCATCG&k=0&no_gap=0&offset=0&limit=50
2.306 | 0.262 | search_minus_done; http://172.18.8.135:50400/match?q=CGATGAATGGGAAATGAACC&k=0&no_gap=0&offset=0&limit=15
2.309 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).