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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 12:09:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:30357422-30357445
ACTCGCATCTAATGACTCTTTTTTTGTTGT30357422GGTTGCAGTATGTTTGTTTCTTCCTGCAAAAGGCTGAGAATCATGAAGGGATCT
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:31947432-31947455
ACTCGCATCTAATGACTCTTCTTTTGTTGT31947432GGTTGCAGTATGTTTGTTTCTTCCTGCAAAAGGCTGAGAATCATGAAGGGATCT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:29375269-29375292
ACTCGCATCTAATGACTCTTCTTTTGTTGT29375269GGTTGCAGTATGTTTGTTTCTTCCTGCAAAAGGCTGAGAATCATGAAGGGATCT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:29842689-29842712
ACTCGCATCTAATGACTCTTCTTTTGTTGT29842689GGTTGCAGTATGTTTGTTTCTTCCTGCAAAAGGCTGAGAATCATGAAGGGATCT
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:31412104-31412127
ACTCGCATCTAATGACTCTTCTTTTGTTGT31412104GGTTGCAGTATGTTTGTTTCTTCCTGCAAAAGGCTGAGAATCATGAAGGGATCT
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:30713605-30713628
AACTCGTATCTAATGACTCTTTTTTGTTGT30713605GGTTGCAGTATGTTTGTTTCTTCCTGCAATAGGCTGAGAATCATGAAGGGATCG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:28648876-28648899
ACTCGCATCTAATGACTCTTCTTTTGTTGT28648876GGTTGCAGTATGTTTGTTTCTTCCTGCAAAAGGCTGAGAATCATGAAGGGATCT
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:31193527-31193550
ACTCGCATCTAATGACTTTTCCTTTGTTGT31193527GGTTGCAGTATGTTTGTTTCTTCCTGCAAAAGGCTGAGAATCATGAAGGGATCT
Malus domestica genome assembly, chromosome: 10.
OU696686.1:31193358-31193381
ACTCGCATCTAATGACTCTTCTTTTGTTGT31193358GGTTGCAGTATGTTTGTTTCTTCCTGCAAAAGGCTGAGAATCATGAAGGGATCT
Malus domestica genome assembly, chromosome: 10.
OU744551.1:31380244-31380267
ACTCGCATCTAATGACTTTTCTTTTGTTGT31380244GGTTGCAGTATGTTTGTTTCTTCCTGCAAAAGGCTGAGAATCATGAAGGGATCT
Malus domestica genome assembly, chromosome: 10.
OU744962.1:32095262-32095285
ACTCGCATCTAATGACTCTTCTTTTGTTGT32095262GGTTGCAGTATGTTTGTTTCTTCCTGCAAAAGGCTGAGAATCATGAAGGGATCT
Malus domestica genome assembly, chromosome: 10.
OU745000.1:31204280-31204303
ACTCGCATCTAATGACTTTTCTTTTGTTGT31204280GGTTGCAGTATGTTTGTTTCTTCCTGCAAAAGGCTGAGAATCATGAAGGGATCT
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:29521199-29521222
ACTCGCATCTAATGACTCTTCTTTTGTTGT29521199GGTTGCAGTATGTTTGTTTCTTCCTGCAAAAGGCTGAGAATCATGAAGGGATCT
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:29788293-29788316
ACTCGCATCTAATGACTCTTCTTTTGTTGT29788293GGTTGCAGTATGTTTGTTTCTTCCTGCAGAAGGCTGAGAATCCTGAAGGGATCT
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:20981005-20981028
ACTCGCATCTAATGACTCTTCCTTTGTTTT20981005GGTTGCAGTATGTTTGTTTCTTCCTGCAAAAGGCTGAGAATCATGAAGGGATCT
Mddb5002G11_e1030.g1 Mddb Malus domestica cDNA 5' similar to sp|O24542|AX2D_PHAAU Auxin-induced protein 22D (Indole-3-acetic acid induced protein ARG13) pir|T10884 auxin-induced protein Aux22d - mung
GO566563.1:363-386
AGATCCCTTCATGATTCTCAGCCTTTTGCA363GGAAGAAACAAACATACTGCAACCACAACAAAAGAAGAGTCATTAAATGCGAGT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:13032535-13032558
CGATCCCTTCATGATTCTCAGCCTATTGCA13032535GGAAGAAACAAACATACTGCAACCACAACAAAAAAGAGTCATTAGTTACGAGTT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:13068324-13068347
CGATCCCTTCATGATTCTCAGCCTATTGCA13068324GGAAGAAACAAACATACTGCAACCACAACAAAAAAGAGTCATTAGTTACGAGTT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:13950899-13950922
CGATCCCTTCATGATTCTCAGCCTATTGCA13950899GGAAGAAACAAACATACTGCAACCACAACAAAAAAGAGTCATTAGTTACGAGTT
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:14163013-14163036
CGATCCCTTCATAATTCTCAGCCTATTGCA14163013GGAAGAAACAAACATACTGCAACCACAACAAAAAAGAGTCATTAGATACGAGTT
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:10512128-10512151
CGATCCCTTCATAATTCTCAGCCTATTGCA10512128GGAAGAAACAAACATACTGCAACCACAACAAAAAAGAGTCATTAGATACGAGTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGTTGCAGTATGTTTGTTTCTTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTTGCAGTATGTTTGTTTCTTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.268 | 0.259 | search_plus_done; http://172.18.8.135:50400/match?q=GGTTGCAGTATGTTTGTTTCTTCC&k=0&no_gap=0&offset=0&limit=50
0.416 | 0.148 | search_minus_done; http://172.18.8.135:50400/match?q=GGAAGAAACAAACATACTGCAACC&k=0&no_gap=0&offset=0&limit=35
0.420 | 0.004 | cgi_end;

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