GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-15 16:41:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Hyperoodon ampullatus genome assembly, chromosome: 8.
OX457063.1:24507424-24507443
GAGAGAGGAATTGCATGGAGAGCAGTGAGG24507424GGTTGGAGGTGGAAGTTGAAGAAGGGGTAGGTAGAAGAGGAAGTCTCACT
Pipistrellus nathusii genome assembly, chromosome: 12.
OY882869.1:59671225-59671244
TAAATACACACACCCTGCTCTTCTGTCACT59671225GGTTGGAGGTGGAAGTTGAAGATAAGGGAAGAGTTATTTTGTGGGTAAAA
Pipistrellus nathusii genome assembly, chromosome: 12.
OY883189.1:59730635-59730654
TAAATACACACACCCTGCTCTTCTGTCACT59730635GGTTGGAGGTGGAAGTTGAAGATAAGGGAAGAGTTATTTTGTGGGTAAAA
Bufo bufo genome assembly, chromosome: 7.
LR991673.1:33431023-33431042
GGAGAAGTATAACGATGGCCCGGGAGAGGA33431023GGTTGGAGGTGGAAGTTGAAGAGGAGGAGAACATTGGAAAGTAGGATAAG
TSA: Pisum sativum contig07559.PisaPYK9 mRNA sequence.
JR958222.1:933-952
GTTAGGAGAACTTGCAGCTGAGCCGGTGGC933GGTTGGAGGTGGAAGTTGAATCGGCTTCATCTCATTTCTTTCTCGCTAAT
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:261269-261288
AGAACCTGAGGCTGTGGCTGAGCCGGTGGC261269GGTTGGAGGTGGAAGTTGAATCGGCTTCATCTCATTTCTCTCTCTGTTTC
Trifolium repens isolate ACLI19 chromosome 04_Pall.
CP125843.1:297064-297083
AGAACCTGAGGCTGTGGCTGAGCCGGTGGC297064GGTTGGAGGTGGAAGTTGAATCGGCTTCATCTCATTTCTCTCTCTCTATC
Trifolium subterraneum genome assembly, chromosome: 5.
OX637465.1:286915-286934
AGAACCTGTGGCTGTGGCTGAGCCGGTGGC286915GGTTGGAGGTGGAAGTTGAATCGGCTTCATCTCATTTCTCTCTCTATCTA
Trifolium fragiferum genome assembly, chromosome: 8.
OX940796.1:41463157-41463176
AGAACCTGAGGCTGTGGCTGAGCCGGTGGC41463157GGTTGGAGGTGGAAGTTGAATCGGCTTCATCTCATTTCAAACCGTACAAA
Amaurobius ferox genome assembly, chromosome: 12.
OX578147.1:12144488-12144507
ATGGGGAGGGAGGAGATTATTTTTGCTTGA12144488GGTTGGAGGTGGAAGTTGAACGTTGAGTCTTTTAAAATTTTCAAGTCGGT
Agonopterix heracliana genome assembly, chromosome: 27.
OY856334.1:2012788-2012807
CCTTAATCTTATTGGTACCATTCTGATGTA2012788GGTTGGAGGTGGAAGTTGAAATCGAACCTCCGCCCGCTGGCTTGGAGTCG
Dioctria linearis genome assembly, chromosome: 4.
OZ005743.1:184655058-184655077
ATTGCCAGGCGATAATATAGATGCCTAGAT184655058GGTTGGAGGTGGAAGTTGAAAGGGGTAGGGTGGTTAGAGATGCATAATAT
Pipistrellus pipistrellus genome assembly, chromosome: 12.
LR862368.1:98396-98415
TTTTACCCACAAAATAACTCTTCCCTTATC98396TTCAACTTCCACCTCCAACCAGTGACAGAAGAGCAGGGTGTGTGTATTTA
Pipistrellus pygmaeus genome assembly, chromosome: 12.
OX465314.1:894026-894045
TTTTACCCACAAAATAACTCTTCCCTTATC894026TTCAACTTCCACCTCCAACCAGTGACAGAAGAGCAGGGTGTGTGTATTTA
Balaenoptera acutorostrata genome assembly, chromosome: 8.
OX465358.1:71001965-71001984
AGTGAGACTTCCTCTTCTACCTACCCCTTC71001965TTCAACTTCCACCTCCAACCCCTCACTGCTCTCCGTGCAATTCCTCTCTC
Microcaecilia unicolor genome assembly, chromosome: 5.
LR594636.1:256139013-256139032
GCTAGACCAGGGAGCCTCTGATTGCATTAA256139013TTCAACTTCCACCTCCAACCACTGAATTTAAAAACAGTATTAAAATTGGA
Tetrao urogallus genome assembly, chromosome: 6.
OX596300.1:13071804-13071823
TACAGCATCTGGCAACATCTGCTGAGTTAC13071804TTCAACTTCCACCTCCAACCTAAAACACAATGGGATGCCAATGCAAAATT
Trifolium repens mRNA, clone: WCC22i06_085, unspecified EST.
FY461838.1:264-283
GAGAGAGAGAGAGAAATGAGATGAAGCCGA264TTCAACTTCCACCTCCAACCGCCACCGGCTCAGCCACAGCCTCAGGTTCT
Trifolium repens mRNA, clone: WCC36o13, unspecified EST.
FY466975.1:198-217
GAGAGAGAGAGAGAAATGAGATGAAGCCGA198TTCAACTTCCACCTCCAACCGCCACCGGCTCAGCCACAGCCTCAGGTTCT
mh-1a_0002_E01 Drought-stressed chickpea leave library Cicer arietinum cDNA clone mh-1a_0002_E01 5', mRNA sequence.
HS107662.1:30-49
CGAGAGAGAGAGAAATGAGATGAGGCCGA30TTCAACTTCCACCTCCAACCGCCACCGGTTCAGCTTCCGCCACCGGTTCT
mh-1b_0017_H06 Drought-stressed chickpea leave library Cicer arietinum cDNA clone mh-1b_0017_H06 5', mRNA sequence.
HS108368.1:230-249
ATACTAGAGAGAGAAATGAGATGAGGCCGA230TTCAACTTCCACCTCCAACCGCCACCGGTTCAGCTTCCGCCACCGGTTCT
TSA: Pisum sativum Ps_contig_mira-ass_3172 mRNA sequence.
JI900006.1:171-190
ATTAGCGAGAAAGAAATGAGATGAAGCCGA171TTCAACTTCCACCTCCAACCGCCACCGGCTCAGCTGCAAGTTCTCCTAAC
Trichoderma reesei strain CBS999.97 chromosome II, complete sequence.
CP017983.1:764812-764831
TCTTGTGGTTGACCTCCCCTCCATCGCCCG764812TTCAACTTCCACCTCCAACCTGTATGCTGAGCAAACAAACGACAGAAACA
Trichoderma reesei strain CBS999.97 chromosome II, complete sequence.
CP020725.1:764809-764828
TCTTGTGGTTGACCTCCCCTCCATCGCCCG764809TTCAACTTCCACCTCCAACCTGTATGCTGAGCAAACAAACGACAGAAACA
Trichoderma reesei strain QM6a x CBS999.97 isolate hexadecad_008A chromosome II, complete sequence.
CP021291.1:764769-764788
TCTTGTGGTTGACCTCCCCTCCATCGCCCG764769TTCAACTTCCACCTCCAACCTGTATGCTGAGCAAACAAACGACAGAAACA
Trichoderma reesei strain QM6a x CBS999.97 isolate hexadecad_008G chromosome II, complete sequence.
CP021305.1:764822-764841
TCTTGTGGTTGACCTCCCCTCCATCGCCCG764822TTCAACTTCCACCTCCAACCTGTATGCTGAGCAAACAAACGACAGAAACA
Cicer arietinum chromosome Ca6.
CP039336.1:59135763-59135782
ATACTAGAGAGAGAAATGAGATGAGGCCGA59135763TTCAACTTCCACCTCCAACCGCCACCGGTTCAGCTTCCGCCACCGGTTCT
Microcos paniculata chromosome 4b.
CP131450.1:18132064-18132083
TCTTCCAAGGAAGCTAATTAAGGGCAAGGC18132064TTCAACTTCCACCTCCAACCTTTCCATGGCCCATGACTTCTTCAATAAAA
Microcos paniculata chromosome 4a.
CP131459.1:21910189-21910208
TCTTCCAAGGAAGCTAATTAAGGGCAAGGC21910189TTCAACTTCCACCTCCAACCTTTCCATGGCCCATGACTTCTTCAATAAAA
Trifolium dubium genome assembly, chromosome: 10.
OX638071.1:39058563-39058582
ATTAGATAAAGAGAAATGAGATGAAGCCGA39058563TTCAACTTCCACCTCCAACCTCCACCGGCTCAGCCACAGCCTCAGGTTCT
Trifolium dubium genome assembly, chromosome: 14.
OX638075.1:34018331-34018350
TTATTAGATAGAGAAATGAGATGAAGCCGA34018331TTCAACTTCCACCTCCAACCTCCACCGGCTCAGCCACAGCCTCAGGTTCT
Lathyrus sativus genome assembly, chromosome: 7.
OZ012741.1:1843146-1843165
ATTAGCGAGAAAGAAATGATATGAAGCCGA1843146TTCAACTTCCACCTCCAACCGCCACCGGCTCAGCTGCAGGTTCTCCTAAC
Lathyrus aphaca genome assembly, chromosome: 3.
OZ014521.1:593228339-593228358
ATTAGCGAGAAAGAAATGATATGAAGCCGA593228339TTCAACTTCCACCTCCAACCGCCACCGGCTCAGCTGCAGGTTCTCCTAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGTTGGAGGTGGAAGTTGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTTGGAGGTGGAAGTTGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.115 | 0.106 | search_plus_done; http://172.18.8.135:50400/match?q=GGTTGGAGGTGGAAGTTGAA&k=0&no_gap=0&offset=0&limit=50
0.547 | 0.432 | search_minus_done; http://172.18.8.135:50400/match?q=TTCAACTTCCACCTCCAACC&k=0&no_gap=0&offset=0&limit=38
0.561 | 0.014 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).