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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-15 16:41:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Rangifer tarandus platyrhyncus genome assembly, chromosome: 19.
OX596103.1:53237117-53237136
TTATCCTTTGATCTGTTGATGGATGTTTTA53237117GGTTGTTTCCATGGTTTTGGTTATTGTAAACAATGCTGCAGCAAACACTG
Vespertilio murinus genome assembly, chromosome: 9.
OZ004713.1:23270931-23270950
TTTATTCTGTCCTTTATCGCAGGGCAGTTT23270931GGTTGTTTCCATGGTTTTGGCCACCGTGAATAATGCTTCAATGAATATAG
Chroicocephalus ridibundus genome assembly, chromosome: 2.
OZ001734.1:6647880-6647899
GAACACTTTTGCACTTCTCGATCACCAACA6647880GGTTGTTTCCATGGTTTTGGCTATTTCCTTGGGCACACCAAAGCTACGAG
Bos taurus clone CH240-70B2, WORKING DRAFT SEQUENCE, 5 unordered pieces.
AC159843.3:35947-35966
TTATCCTTTCATCTGTTGATGGATGTTTTA35947GGTTGTTTCCATGGTTTTGGTTATTGTAAACAATGCTGCAGCAAACCCTC
Sambucus nigra genome assembly, chromosome: 16.
OX422222.1:124340339-124340358
CACTACGAAACCAAAACCAAAATCGAAGTT124340339GGTTGTTTCCATGGTTTTGGAACTATAACCTAACCGATACCCTAACCCGA
Trifolium dubium genome assembly, chromosome: 6.
OX638067.1:46667385-46667404
GGTTTGAGTGAGATGAAGGATAAAGTTGAT46667385GGTTGTTTCCATGGTTTTGGAGTTGAGAGTGGAGGTGTGAAAAGAGAGGC
Trifolium dubium genome assembly, chromosome: 8.
OX638069.1:40209378-40209397
GGTTTGAGTGAGATGAAGGATAAAGTTGAT40209378GGTTGTTTCCATGGTTTTGGAGTTGAGAGTGGTGGTGTGAAGAGAGAGGC
Alisma plantago-aquatica genome assembly, chromosome: 1.
OY856409.1:1311051059-1311051078
TGATGGTCAAGTTAACCCCTATTTTGGTTG1311051059GGTTGTTTCCATGGTTTTGGAGTATAGTCTTGCTCTTGTCGTGGTCATGA
Noctua janthe genome assembly, chromosome: 28.
OU342580.1:2097456-2097475
ACTGGTGTCACTCGCAGTTACTTCGTACTT2097456GGTTGTTTCCATGGTTTTGGTACGTTAGACGGCGAGAGCATTAGTTAGTA
Noctua janthina genome assembly, chromosome: 29.
OY755079.1:2265184-2265203
ACTGGTGTCACTCGCAGTTACTTCGTACTT2265184GGTTGTTTCCATGGTTTTGGTACGTTAGACGGCGAGAGCATTAGTTAGTA
Bos mutus isolate yakQH1 chromosome 8.
CP027076.1:7683256-7683275
GAGGGTTTGCTGCAGCATTGTTTACAATAA7683256CCAAAACCATGGAAACAACCTAAAACATCCATCAACAGATGAAAGGATAA
Sus scrofa scrofa breed NS chromosome 13.
CP071564.1:162379172-162379191
CAATGTTCATTGAAGCACTATTTACAATAG162379172CCAAAACCATGGAAACAACCTCAACGTTCATCAACGGAGAATTGGATAAA
Bos taurus genome assembly, chromosome: 8.
LR962766.1:9632388-9632407
GAGGGTTTGCTGCAGCATTGTTTACAATAA9632388CCAAAACCATGGAAACAACCTAAAACATCCATCAACAGATGAAAGGATAA
Cervus elaphus genome assembly, chromosome: 29.
OU343106.1:10314538-10314557
CAGTGGTCGCTGCAGCATTGTTTACAATAA10314538CCAAAACCATGGAAACAACCTAAAACATCCATCAACAGATCAAAGGATAA
Orcinus orca genome assembly, chromosome: 7.
OW443367.1:6160593-6160612
AAATGTTCATGGCACCATTATTCATAACAG6160593CCAAAACCATGGAAACAACCCAAATGCCCATCAACTGAGGAATAGATAAA
Bos gaurus x Bos taurus genome assembly, chromosome: 8.
OX258962.1:12589894-12589913
GAGGGTTTGCTGCAGCATTGTTTACAATAA12589894CCAAAACCATGGAAACAACCTAAAACATCCATCAACAGATGAAAGGATAA
Bos taurus strain mammals genome assembly, chromosome: 8.
OX344697.1:11186947-11186966
GAGGGTTTGCTGCAGCATTGTTTACAATAA11186947CCAAAACCATGGAAACAACCTAAAACATCCATCAACAGATGAAAGGATAA
Lagenorhynchus albirostris genome assembly, chromosome: 6.
OX459078.1:120914762-120914781
AAATGTTCATGGCACCATTATTCATAACAG120914762CCAAAACCATGGAAACAACCCAAATGCCCATCAACTGAGGAATAGATAAA
Rangifer tarandus platyrhyncus genome assembly, chromosome: 18.
OX459954.2:10603995-10604014
CAGTGTTTGCTGCAGCATTGTTTACAATAA10603995CCAAAACCATGGAAACAACCTAAAACATCCATCAACAGATCAAAGGATAA
Sus scrofa genome assembly, chromosome: 13.
OY997220.1:173771033-173771052
CAATGTTCATTGAAGCACTATTTACAATAG173771033CCAAAACCATGGAAACAACCTCAACGTTCATCAACGGAGAATTGGATAAA
Bos taurus genome assembly, chromosome: Bta08.
OY997236.1:13140696-13140715
GAGGGTTTGCTGCAGCATTGTTTACAATAA13140696CCAAAACCATGGAAACAACCTAAAACATCCATCAACAGATGAAAGGATAA
Muntiacus reevesi genome assembly, chromosome: 17.
OZ005641.1:9200538-9200557
CAGTGGTCGCTGCAGCTTTGTTTACAATAA9200538CCAAAACCATGGAAACAACCTAAAACATCCATCAACAGATCAAAGGATAA
Larus fuscus genome assembly, chromosome: 2.
OZ010754.1:161181297-161181316
CTCGTAGCTTTGGTGTGCCCAAGGAAATAG161181297CCAAAACCATGGAAACAACCTGTTGGTGATCGAGAAGTGCAAAAGTGTTC
Trifolium pratense cDNA clone:RCE08616.
BB909753.1:88-107
GCTTCTCTCTTCACACCACCACTCTCAACT88CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE10184.
BB911119.1:91-110
GCTTCTCTCTTCACACCACCACTCTCAACT91CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE20595.
BB915329.1:82-101
GCTTCTCTCTTCACACCACCACTCTCAACT82CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE21480.
BB916113.1:43-62
GCTTCTCTCTTCACACCACCACTCTCAACT43CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE23202.
BB917590.1:91-110
GCTTCTCTCTTCACACCACCACTCTCAACT91CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE24730.
BB918931.1:55-74
GCTTCTCTCTTCACACCACCACTCTCAACT55CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE25377.
BB919494.1:88-107
GCTTCTCTCTTCACACCACCACTCTCAACT88CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE25409.
BB919520.1:59-78
GCTTCTCTCTTCACACCACCACTCTCAACT59CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE25664.
BB919749.1:88-107
GCTTCTCTCTTCACACCACCACTCTCAACT88CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE26444.
BB920410.1:88-107
GCTTCTCTCTTCACACCACCACTCTCAACT88CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE27331.
BB921196.1:30-49
CTTCTCTCTTCACACCACCACTCTCAACT30CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE31335.
BB923724.1:83-102
GCTTCTCTCTTCACACCACCACTCTCAACT83CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE32090.
BB923864.1:23-42
CTTCACACCACCACTCTCAACT23CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE32353.
BB924094.1:90-109
GCTTCTCTCTTCACACCACCACTCTCAACT90CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE33650.
BB924900.1:68-87
GCTTCTCTCTTCACACCACCACTCTCAACT68CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE37322.
BB926395.1:75-94
GCTTCTCTCTTCACACCACCACTCTCAACT75CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE38161.
BB927132.1:83-102
GCTTCTCTCTTCACACCACCACTCTCAACT83CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE38513.
BB927443.1:79-98
GCTTCTCTCTTCACACCACCACTCTCAACT79CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium pratense cDNA clone:RCE40050.
BB928775.1:97-116
GCTTCTCTCTTCACACCACCACTCTCAACT97CCAAAACCATGGAAACAACCATCAACTTTATCTTTCATATCACTCAAACC
Trifolium repens mRNA, clone: WCC38i09_037, unspecified EST.
FY467565.1:113-132
GCTTCTCTCTTCACTCCACCACTCTCAACT113CCAAAACCATGGAAACAACCATCAACTTTATCCTTCATCTCACTCAAACC
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-269K10.
CU695046.2:94363-94382
CAATGTTCATTGAAGCACTATTTACAATAG94363CCAAAACCATGGAAACAACCTCAACGTTCATCAACGGAGAATTGGATAAA
Trifolium repens isolate ACLI19 chromosome 05_0cc.
CP125844.1:911281-911300
GCTTCTCTCTTCACACCACCACTCTCAACT911281CCAAAACCATGGAAACAACCATCAACTTTATCCTTCATCTCACTCAAACC
Trifolium repens isolate ACLI19 chromosome 05_Pall.
CP125845.1:705923-705942
GCTTCTCTCTTCACTCCACCACTCTCAACT705923CCAAAACCATGGAAACAACCATCAACTTTATCCTTCATCTCACTCAAACC
Trifolium subterraneum genome assembly, chromosome: 7.
OX637467.1:607155-607174
GCTTCTCTCTTCACACCACCACTCTCAACT607155CCAAAACCATGGAAACAACCATCAACTTTATCCTTCATCTCACTCAAACC
Noctua comes genome assembly, chromosome: 28.
OY720295.1:7857952-7857971
TACTTACTAATACTCTCGCCGTCTAACGTA7857952CCAAAACCATGGAAACAACCAAATACAAAGTAACTGCGAGTGACATCAGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGTTGTTTCCATGGTTTTGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTTGTTTCCATGGTTTTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.131 | 0.122 | search_plus_done; http://172.18.8.135:50400/match?q=GGTTGTTTCCATGGTTTTGG&k=0&no_gap=0&offset=0&limit=50
0.489 | 0.358 | search_minus_done; http://172.18.8.135:50400/match?q=CCAAAACCATGGAAACAACC&k=0&no_gap=0&offset=0&limit=40
0.513 | 0.024 | cgi_end;

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